Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00298 ATGACTTTTGGTTGGTGTTGCTCTGTGTGTATGATATTTGTCTTGGTGGGTTTGAGAGTAGAAGAAGCTAATGCTCAGTTTTTGAGAAAAGTTGGAAGAAAACAGTTACCTTACTGGTCAATATTGGTGGATCAATCAGGGCATGGAAACTTCACCACAATACAATCTGCCATTGATTCAGTTCCTTCTCATAACATGTATTGGGTTTCTATCAAGGTCAAGGCTGGTACCTATAGAGAAAAAGTGAAGATTCCTTATGATAAGCCTTACATCATATTGAAAGGGGAAGGAAAGAGAAGAACTTTTGTTGAGTGGGATGACCATTATAATACCTCACAGAGTCCTACGTTTGCAGCCATGGCTGACAACGTTGTTGTCAAATCCATGAGCTTTAGGAATTCATACAACAACCCAATAAACAGTAAAGCCATTAAGCCTGCTGTGGCTGCTATGGTTAGTGGAGACAAGTCGTACTTTTTCAGAGTTGGTTTCTTCGGTTTGCAAGACACTTTATGGGACGACACAGGAAGACATTACTACAAGCTTTGCACCATTCAAGGTGCCATTGATTTTATCTTCGGTGCAGGCCAATCATTATTTGAGAGATGTTCCATATCTGTGATTGGTGGAGCACTAGATCCTGGGTTACCAGGATTCATCACAGCACAAGGGAGAACACATTCAGAAGATGAAAATGGCTTTGTTTTCATTCATTCTCATGTCTTTGGAAATGGAACAACTTACTTGGGGAGACCGTGGAGAAGTCATGCTAGGGTTTTGTTTTACAAGACCAACTTCACCAACGTTGTACAACCTGCTGAGTATGGAAACTTTGGGGCTGGTTCTGACACTTCTGAAAGAGTGAGTTGGACAAAGAAGTTGGATCTAGAAACAATTGAGAATATGACAAGCACCAAGTTCATTGACACTGATGGCTGGCTTCAGAAACAACCATTCTAA 960 0.4094 MTFGWCCSVCMIFVLVGLRVEEANAQFLRKVGRKQLPYWSILVDQSGHGNFTTIQSAIDSVPSHNMYWVSIKVKAGTYREKVKIPYDKPYIILKGEGKRRTFVEWDDHYNTSQSPTFAAMADNVVVKSMSFRNSYNNPINSKAIKPAVAAMVSGDKSYFFRVGFFGLQDTLWDDTGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRTHSEDENGFVFIHSHVFGNGTTYLGRPWRSHARVLFYKTNFTNVVQPAEYGNFGAGSDTSERVSWTKKLDLETIENMTSTKFIDTDGWLQKQPF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00298 319 FunFam Pectinesterase 37 318 - -
Vimu7g00298 319 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Vimu7g00298 319 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 315 - -
Vimu7g00298 319 Pfam Pectinesterase 41 310 IPR000070 GO:0030599|GO:0042545
Vimu7g00298 319 SUPERFAMILY Pectin lyase-like 40 316 IPR011050 -
Vimu7g00298 319 Gene3D - 39 319 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00298 Vimu-Chr7 3594147 3597743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00298 40 272 Carbohydrate Esterase AT2G19150 44.872 2.37e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00298 - - gmx:100819252 521.931