Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00297 ATGAAAAATTCTTTCAATGATCCAAAAAAGGGGAACCCTATGACACCTGCAGTGGCTGCAATGATAAGTGGAGACAGGTCATCTTTCTATGGTGTTGGCTTCTACAGTTTGCAAGATACTCTGTGGGATGATAAAGGAAGACATTACTTTAACTCTTGCACCATAGAAGGTGCTATGGATTTCATCTTTGGTGCTGGTCAATCTTTATATGAGAGTTGTAGCATATCAGTTCGTGAAGCGTATCCAGGTAAAGCAATTATTGGTTTCATCACAGCGCAAGGGAGAATGAATGCAGACGATGAAAATGGTTTTGTTTTCAAGAACTGCAATATCCATGGAGTTGGTAAAACATACTTGGGAAGACCATGGAGAGCTTATGCCAGAGTTCTTTTCTACAAAACAACAATGTCTTCCATCATTCAACCACTAGGTTGGCAGCCATGGAATTCCAGTGCCGATCTAGGGGGAGTGGCATTCTCAGAGTATGATAATATGGGTCCTGGTTCAGCCTTGTCTGGGAGAGTGAGCTGGTTGAAGAAATTGGATTCATCAACTCTCATGAAAATGACAAGTACAGAATTCGTGGATCATGAAGGTTGGCTCAAGACTCATCACATGTTATAA 624 0.4135 MKNSFNDPKKGNPMTPAVAAMISGDRSSFYGVGFYSLQDTLWDDKGRHYFNSCTIEGAMDFIFGAGQSLYESCSISVREAYPGKAIIGFITAQGRMNADDENGFVFKNCNIHGVGKTYLGRPWRAYARVLFYKTTMSSIIQPLGWQPWNSSADLGGVAFSEYDNMGPGSALSGRVSWLKKLDSSTLMKMTSTEFVDHEGWLKTHHML 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00297 207 SUPERFAMILY Pectin lyase-like 12 203 IPR011050 -
Vimu7g00297 207 Gene3D - 1 207 IPR012334 -
Vimu7g00297 207 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 12 202 - -
Vimu7g00297 207 Pfam Pectinesterase 11 196 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00297 Vimu-Chr7 3583463 3585993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00297 8 202 Carbohydrate Esterase AT1G05310 43.939 3.41e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00297 - - vra:106778425 348.591