LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00297	ATGAAAAATTCTTTCAATGATCCAAAAAAGGGGAACCCTATGACACCTGCAGTGGCTGCAATGATAAGTGGAGACAGGTCATCTTTCTATGGTGTTGGCTTCTACAGTTTGCAAGATACTCTGTGGGATGATAAAGGAAGACATTACTTTAACTCTTGCACCATAGAAGGTGCTATGGATTTCATCTTTGGTGCTGGTCAATCTTTATATGAGAGTTGTAGCATATCAGTTCGTGAAGCGTATCCAGGTAAAGCAATTATTGGTTTCATCACAGCGCAAGGGAGAATGAATGCAGACGATGAAAATGGTTTTGTTTTCAAGAACTGCAATATCCATGGAGTTGGTAAAACATACTTGGGAAGACCATGGAGAGCTTATGCCAGAGTTCTTTTCTACAAAACAACAATGTCTTCCATCATTCAACCACTAGGTTGGCAGCCATGGAATTCCAGTGCCGATCTAGGGGGAGTGGCATTCTCAGAGTATGATAATATGGGTCCTGGTTCAGCCTTGTCTGGGAGAGTGAGCTGGTTGAAGAAATTGGATTCATCAACTCTCATGAAAATGACAAGTACAGAATTCGTGGATCATGAAGGTTGGCTCAAGACTCATCACATGTTATAA	624	0.4135	MKNSFNDPKKGNPMTPAVAAMISGDRSSFYGVGFYSLQDTLWDDKGRHYFNSCTIEGAMDFIFGAGQSLYESCSISVREAYPGKAIIGFITAQGRMNADDENGFVFKNCNIHGVGKTYLGRPWRAYARVLFYKTTMSSIIQPLGWQPWNSSADLGGVAFSEYDNMGPGSALSGRVSWLKKLDSSTLMKMTSTEFVDHEGWLKTHHML	207

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00297	207	SUPERFAMILY	Pectin lyase-like	12	203	IPR011050	-
	Vimu7g00297	207	Gene3D	-	1	207	IPR012334	-
	Vimu7g00297	207	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	12	202	-	-
	Vimu7g00297	207	Pfam	Pectinesterase	11	196	IPR000070	GO:0030599\|GO:0042545

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00297	Vimu-Chr7	3583463	3585993	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00297	8	202	Carbohydrate Esterase	AT1G05310	43.939	3.41e-57	184

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00297	-		-	vra:106778425	348.591

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