Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00293 ATGGCCACCACACTAGGCCTGGAGCTTCTCCCTGCTGGGGGTCCCAAGAGGTTCACTTACTCAGAAATCAAGGCTGCAACCAATGACTTCTCCAATCTCATAGGTAAAGGAGGCTTTGGAGATGTCTACAAAGGTGAGTTGCCAGATCACAGAGTGGTGGCAGTGAAGTGCCTCAAGAATGTCACAGGTGGAGATGCTGAGTTCTGGGCAGAAGTCACAATCATTGCCAGAATGCACCATCTCAACTTGTCTATGAACACATCCCCTGTGGCTCATTGGACAAGTACCTCTTCAGGGTCAACAAGTCTCACAGTAATAATAACAACAATCTTAAAGATCAATCAAGTCCAAACACACCACAGCAGAAGCCGGTTTTGGATTGGAGCATGA 390 0.4744 MATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLSMNTSPVAHWTSTSSGSTSLTVIITTILKINQVQTHHSRSRFWIGA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00293 129 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Vimu7g00293 129 Gene3D Phosphorylase Kinase; domain 1 8 86 - -
Vimu7g00293 129 SUPERFAMILY Protein kinase-like (PK-like) 11 83 IPR011009 -
Vimu7g00293 129 PANTHER OS07G0415500 PROTEIN 5 105 - -
Vimu7g00293 129 Pfam Protein tyrosine and serine/threonine kinase 31 85 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00293 Vimu-Chr7 3558334 3558769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00293 18 83 Trihelix Transcription Factor Family AT1G26150 63.768 1.11e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu7g00293 PK_Tyr_Ser-Thr 6.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00293 - - gmx:100775518 170.629