Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00290 ATGGAAGCTACACACATTCGAGAAAAGGGTGTTGTTGAGGGAACTGAAAATGAAGAAGTTCTTCTCAAGAACATTATTGCAACTCATCCTTTGTATGAAGTTTTGATTCAATCTCACATCAACTGCTTGAAGGTGGGATTAAGCGAAGCTGAAGTGTTTGATGATGATGCACTGAAGAAGCTGGTGAATTCAAAGTCCAAAGCAACACCTGGTGCAAACACTTCAGAGTTAGATCACTTCATGGAAGCTTATTGCATGGCACTGAGCAAGCTGAAAGAGGCAATAGAAGAACCAACAAAAGAAACGAATGCTTTCATCAGAGCCACGTATCATGAACTAAAGCAACTGGAAGAAGTGAAGCACCCATAA 369 0.4065 MEATHIREKGVVEGTENEEVLLKNIIATHPLYEVLIQSHINCLKVGLSEAEVFDDDALKKLVNSKSKATPGANTSELDHFMEAYCMALSKLKEAIEEPTKETNAFIRATYHELKQLEEVKHP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00290 122 SMART KNOX2_2 66 118 IPR005541 GO:0003677|GO:0005634
Vimu7g00290 122 Pfam KNOX2 domain 75 116 IPR005541 GO:0003677|GO:0005634
Vimu7g00290 122 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 9 120 - -
Vimu7g00290 122 Pfam KNOX1 domain 22 46 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00290 Vimu-Chr7 3502847 3503838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00290 22 116 Homeobox Transcription Factor Family AT4G08150 34.653 8.21e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00290 - - vum:124830379 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00290 7 3502847 3503838 Vimu7g00290 7 3502847 3503838 ECH