Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00280 ATGGATCAACCAAATCCACCACTCTCCTCCAAACCCAAACTCGCTTCAGAGTCGCCGCTCCACCGCGTCACTCCCACCTCTAACCGTTTTCGCAGCTCCCAGCTTCTCAGGGAGAGAGAAAGCAAGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTTAAAGCTGACCGCGAGAAACTCCGAAGGGACCGACTCAACGAACACTTCCAAGAGCTGGGAAACACGTTAGTGGTGGTACCAGTAGAGGTAATGGAAGTGTCAGTGGTTGGTGGTAATGGCAACAACAATGAGTATAGTAGCAATGACAGTGATAGTACTGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAACTGCTGAAGTTAATAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAGCTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATGGACTGCAATTGACCACTCTGTTGTCATTAGTCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCTCCAATTTCCATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCCGGTCCCATTCCTAGTCCTTGTTCAATGTATGTCCCATATTCTACTCCAACTAACAACCCAGTTGATCCACCATCTGTGCTTTATGCTTCCACATCCCACGTGTCGAACCAAAGGGAATCTTTTAGCAAGTCATCGGGAGATAAAAGGCCTAGTAGTGATGCTGAACGATGTAGCGAGTCTCACGATGTGGCCACAGAACTTGAACTTAAGATGCCTGGATCATCATCAACACAACAAGATTCCACTTCTGGAGGAAGGAAAGGCAAGCATTCAGTGATAAGAGATAGAACCATCATAGGTGGGAGTGCTGGGAGTGCTTCAAGTTATTCTTCTTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATTGA 1086 0.4558 MDQPNPPLSSKPKLASESPLHRVTPTSNRFRSSQLLRERESKGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLVVVPVEVMEVSVVGGNGNNNEYSSNDSDSTDPDRPKNDKATILTETVQMLKDLTAEVNRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPWTAIDHSVVISPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPGPIPSPCSMYVPYSTPTNNPVDPPSVLYASTSHVSNQRESFSKSSGDKRPSSDAERCSESHDVATELELKMPGSSSTQQDSTSGGRKGKHSVIRDRTIIGGSAGSASSYSSSQGLQDSSNSVGDIPKTD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00280 361 MobiDBLite consensus disorder prediction 94 118 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 33 59 - -
Vimu7g00280 361 CDD bHLH_AtILR3_like 58 162 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 1 59 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 254 273 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 274 298 - -
Vimu7g00280 361 Gene3D - 51 159 IPR036638 GO:0046983
Vimu7g00280 361 Pfam Helix-loop-helix DNA-binding domain 54 133 IPR011598 GO:0046983
Vimu7g00280 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 161 IPR036638 GO:0046983
Vimu7g00280 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 133 IPR011598 GO:0046983
Vimu7g00280 361 PANTHER TRANSCRIPTION FACTOR BHLH121 32 80 IPR044579 GO:0003700|GO:0006879
Vimu7g00280 361 SMART finulus 59 139 IPR011598 GO:0046983
Vimu7g00280 361 MobiDBLite consensus disorder prediction 333 361 - -
Vimu7g00280 361 Coils Coil 123 178 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 254 361 - -
Vimu7g00280 361 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00280 Vimu-Chr7 3409656 3413667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00280 43 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 50.929 9.24e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g00280 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00280 - - gmx:100818281 419.468