Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00277 ATGCATTGGGATCAGAGAAAGTCATCTGGTATTGCAAATATTGTAGAAAACGAGCTATATATGGATGCTGCTTCACTGGAGGAGTATATCAACAGAAAGACACTGGTTCAGCGGTTGAAGACAAAAGTCAAAATGTTGGATGCAAATAAAAGTTGTCAAGTAGACAATACTATTTCTTGCACATCTACCACGTTGCCATCTTCTGAGTCATTGCATTCTTGGTCTAGTGGAAGTCTACCGGGACATGCTTTTCAGAAAGTGCTACATCCTTGCATTAATGTAACTGATTATGGTGCAGCATATAATAAACATGACTTACCAAAATGTAATGATTTGGATGTGCTTTCTGAGTTTTCTGCTGCTTCTGTTGGGAGAAGGAATTTGGAAACTAGCTCCAAGTCATTTGAAGCATCCAATCATTTTCTTGATTGTCTTTCTGAAGTCACGCAACCACCAACCAAAAGAAGAAAAGTGGGTTCTGAAACTGAGTGCAAGGTGAAACAAATTACAAATCCAGTATCTGAAAGCAATACTTGCATAAAACATGATTTAAGGAATGGTACATTTGGACCACCTCTCGAGCAAGAAACAATTTTATATGAAGTCACGCAACCACCAACCAAAAGAAGAAAAGTGGGTTGTGAGGTGGAACAAATTACAAATCCCGTATGGGAAAGCAATACTTGGATAAAACATGATTTAAGGAATGGTACATTTGGACCGCCTCTTGAGCAAGAACCAATTTTATATGAAGAGGAAATGCAAGACAGAAACACATCCAAGCAATATGAGTCCAATGCTAGAGAGGAAGTCCTTCAACCAAAATATGAAGAAAAGGGAATGAAGTCCATACATCCAACCGCTGATACTGGTACAACGGATGGAGAATCTTACAAATGCCAATTATGTTCAATGGCAAGGCTGTACTTTGGCCCTGAGCCAATTTATTGCTTTTGTTGCGGCACCATCATCAGGCATAATGCATGTTATTACTATAGAAGAGAAGAAGAGGACACACATAATTGCTTTTGTACTACATGCTATAGGAATGCTCGAGGTGGTAACATCACATTCAACGGGACAACTGTTTCCAAGACAGATCTTTGCAAAACTAAAAATGATAGAGAATGCGAAGAACCGTGGGTTCAATGCAGTAAATGCAAAAATTGGCAGCATCACATATGCGCACTCTATAACAATAGAAAAGATTTAGATAACAGTGCTGAATATATCTGCCTTTTATGCTGCCTAAACGAAAATAGAAATGATGTGCGTGTACCCTTTGATGCTAAAGACTTCCCGAGAACCATGCTTAGTGACCACATAGAGAGTAGGCTTTTGAAGCGTCTCAGTCAAATTGAAAGGAATAAGATTCCAGAGGGTTTTGTAGCAGACAATCTTTCTGTTAGGGTTGTGCTATCTGTGGACAAACATATTGAAGTGAAGAAAGAATTTCTGAATATCTTTGAGGGGGATAATTATCCTGCAGAGTTTTCTTACGCTTCAAAAGTTATTCTTCTGTTTCAAAAGATTGATGGAGTGGATGTGTGTCTCTTTGCAATGTATGCTCAAGAGCCAGAAATACATATCTCGGCCACAGAATCTCTCCGTACCTTCGTTTACCATGAAATATTGATTGGATATCTTGATTTTTGCAAGAAAAGAGGTTTTACAACTTGTTACATATGGTCCTGTCCATCTATAAAGGGAGAAGATTATATATTCTACTGTCATCCTGAATCTCAAAAAACTCCGAAAAAAGATCAACTACGACATTGGTATCATTCAGCACTAAGAAAGGCTGTTGAACAGGATATTGTTGTTGGTTTATCAAATATATACGATTATTTCTTTGTTCCTACTGGAAAACGTGAATCCAAGGTAACGGCTGCTCGTTTGCCTTACTTTGACGGAGACTTCTGGTCTGGTGCTGCTATGGATAAAGCCAGTGAGATTGAACAGCAAACTGGAGGAAACCGAGAAAAGATTATGAAATTAATACCAAGCAGATCTTTGAAGTGGATGGGATGTGTAAATCTTTCAAAAGGAACTGCCAAAGATATTCTAGTGATGCAGAAGCTGGGACAAACCATATCACCTTTCAAGGAAGATTTTATGGTAGTTCAACTTCAGTACGTTTGCATCCACTGCCATAAAGTGATAGAGTGTGGGAAGCGATGGTTTTGCAAGGAGTGCAAGATATTTCAGGAGTGTGAAAGATGTCACACTTTTGATTCCCACATTTCTGTAAAAGCCGAGAAGCACAAACTTTATGAGGTCCTTATTGAAGGCATCCATCGTGATACAACTAAGGAGAAAGATATCATTATTAATAATGAGTTATTTGATACCAGATATAACTTTCTTAGCTTTTGCCAAAGGAATAGATTTCAGTTTGATTCACTCCGTCGAGCCAAGTATTCCTCAATGATGATGCTCCATTTTTTGAGCAACCCTACGACTAGGACTGATGGAATAAGTTTCACTCAACCCGCGTTATCTTCTTCAGAAAATGAAGAGTTAAAGCAGAACACAGCAGTGGAACTGCTGGATGTTATAAAGCACGCATCAGAGTGTCATTCAACTCAAACTCAAGCATGCGCTTATCCCTACTGCCTTAAAATAAGAAAGTTGTTTTATCATGCCAGTAGGTGTACTGTTCGAGTTTCTGGAGGATGCCAACCTTGTAAGAAGGTTTGGCAGGCAATAGCTTTACACTCAAGGACTTGTACAGACTCAGCATGTCGCATTCCTCGTTGCATGTTAGGATATGAAAAAGCAAATGGTTGGCATCACAATCTGAATCAAGACGTAGAACTGCAATTTTGGAAGATAACAAAGAACTAG 2847 0.3881 MHWDQRKSSGIANIVENELYMDAASLEEYINRKTLVQRLKTKVKMLDANKSCQVDNTISCTSTTLPSSESLHSWSSGSLPGHAFQKVLHPCINVTDYGAAYNKHDLPKCNDLDVLSEFSAASVGRRNLETSSKSFEASNHFLDCLSEVTQPPTKRRKVGSETECKVKQITNPVSESNTCIKHDLRNGTFGPPLEQETILYEVTQPPTKRRKVGCEVEQITNPVWESNTWIKHDLRNGTFGPPLEQEPILYEEEMQDRNTSKQYESNAREEVLQPKYEEKGMKSIHPTADTGTTDGESYKCQLCSMARLYFGPEPIYCFCCGTIIRHNACYYYRREEEDTHNCFCTTCYRNARGGNITFNGTTVSKTDLCKTKNDRECEEPWVQCSKCKNWQHHICALYNNRKDLDNSAEYICLLCCLNENRNDVRVPFDAKDFPRTMLSDHIESRLLKRLSQIERNKIPEGFVADNLSVRVVLSVDKHIEVKKEFLNIFEGDNYPAEFSYASKVILLFQKIDGVDVCLFAMYAQEPEIHISATESLRTFVYHEILIGYLDFCKKRGFTTCYIWSCPSIKGEDYIFYCHPESQKTPKKDQLRHWYHSALRKAVEQDIVVGLSNIYDYFFVPTGKRESKVTAARLPYFDGDFWSGAAMDKASEIEQQTGGNREKIMKLIPSRSLKWMGCVNLSKGTAKDILVMQKLGQTISPFKEDFMVVQLQYVCIHCHKVIECGKRWFCKECKIFQECERCHTFDSHISVKAEKHKLYEVLIEGIHRDTTKEKDIIINNELFDTRYNFLSFCQRNRFQFDSLRRAKYSSMMMLHFLSNPTTRTDGISFTQPALSSSENEELKQNTAVELLDVIKHASECHSTQTQACAYPYCLKIRKLFYHASRCTVRVSGGCQPCKKVWQAIALHSRTCTDSACRIPRCMLGYEKANGWHHNLNQDVELQFWKITKN 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00277 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 419 IPR013083 -
Vimu7g00277 948 SMART KAT11_2 450 721 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu7g00277 948 ProSiteProfiles Zinc finger TAZ-type profile. 834 923 IPR000197 -
Vimu7g00277 948 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 427 821 IPR031162 GO:0004402
Vimu7g00277 948 PANTHER CBP/P300-RELATED 219 921 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu7g00277 948 SMART TAZ_2 840 921 IPR000197 -
Vimu7g00277 948 SUPERFAMILY RING/U-box 689 751 - -
Vimu7g00277 948 Pfam TAZ zinc finger 849 920 IPR000197 -
Vimu7g00277 948 Gene3D TAZ domain 834 942 IPR035898 -
Vimu7g00277 948 Pfam Histone acetylation protein 465 651 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vimu7g00277 948 CDD PHD_HAC_like 343 415 - -
Vimu7g00277 948 SUPERFAMILY FYVE/PHD zinc finger 364 418 IPR011011 -
Vimu7g00277 948 SUPERFAMILY TAZ domain 839 922 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00277 Vimu-Chr7 3378864 3384194 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vimu7g00277 HAT_KAT11 3.1e-13 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00277 K04498 - gmx:102668168 859.366