Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00272 ATGGGAGACAAAGAACTCAAGCCTTGCAAGCCAAAGTTGATCAAAAGGATTAGGTTGAATGGTGGTCATGAAGGTTTGAATGAAAATTTCTCTCGTGCTTGTAGATCACGAGGAGAAGGAAATTTGGAGGAACGACGAAGCTTTCACAATGGCCGACGTGGTGGTAGTCTGAGGAAGATAGTGGTTACTACAAGGGTTTCCATTCTTCTCCTATGCTCGCTCTCCGCCTTTGTGCTACGCTTCTCCGCCTCTGAACTCTCGCCAGACGACGTCGTTGCTCTCGTCGCTCCCATGGCTCAGTCGCGTTCCGCCGGCGACGCATGCAAGGGTGGCACGGCGGAGTTCCCGGCGGGGCTAAGGGTTTTGGTCGTCGACGATGACGCCACCACGCTGAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACGTGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGACTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGATAGTACAACAAGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAACATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGAAGCTTGGAAGACAGTGATTGGAATAAACGGGGAAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCCGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCCACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCACCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGATAAGGCTGTGCCGAAGAGAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCCAGTCATTTGCAGGGGTGGTTGATGAGGTTGCCTGTTGTGAATGAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCTGTTCCTGGGACTATAGAATCCAAGCTGAGCGCTACTGGAAGATATGACATACAAGCTTTGGCTGCTGCTGGCCATGTTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCTGCAACTAGCATAATGTCTACAGCGGACCAGGCTACATTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTTTTGTAAAGTGTCCTTCCAACATTGGCAAGGATTTTCCTCCCTCTTTCTTAACTGCAAATGACGTATCGTCAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGATGAAAGAGTGGGTACTCAGTATAACAACATGCTGATGGATATATTAGATCACCAACAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCAGCAGCTAAAGCAACAACAACAGCCTTTGGTACATGATCAAAGCTGTTCAATCAATGTTCAACCATCTTGCTTGGTGATTCCATCTCAATCCTGTGACACTCTACAGGCAGTAAACGGTTCTGCTTCTGTCAATCAGAATTGCAGTTTTGGCATGAATGCCATTATTGATTATAGTTTATTGTCACAGAAATCAAATAATTCAGTTAGTGCCTCTCAATTTTCCGGTGGGGACACAAAAACTCAAGCCGTTCTGTATGCTCATACTACGCCCTCCACTTGTTCTATGAGCTCCATCAATGGCAGTATTCCGCAGCTTCAAAACTCAACTTTGACATTTGGTGGTGCAAGACCTTTGTTTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTGAAATCAGGTGATTCACTTGATCAAGTGTGCCTTAGGAATATTGGGTTTATTGGTAAAGGTACCTGTATTCCAAATAGGTTTGTTCAAAATGAAATTGAATCATCTGTCAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCACTGGCAACACGCTGAAGGAGGAGCCAAATTTTATAAATATGCAAAAAGTGAGTCGCCGCCCAATCTTTGGAAGATATCAATCTTGTGATCATTCAAGTGTTTTTACTGAATAG 2268 0.4409 MGDKELKPCKPKLIKRIRLNGGHEGLNENFSRACRSRGEGNLEERRSFHNGRRGGSLRKIVVTTRVSILLLCSLSAFVLRFSASELSPDDVVALVAPMAQSRSAGDACKGGTAEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSLEDSDWNKRGNDDTEYTSSVADAAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQGWLMRLPVVNEKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLSATGRYDIQALAAAGHVPPETLAALHAELLGRPATSIMSTADQATLLQASIGLKHSHAEHAVAYGQPFVKCPSNIGKDFPPSFLTANDVSSGYGAWPSSNNTMGSVRPNNSDERVGTQYNNMLMDILDHQQRQQPQQKQQQHQQLKQQQQPLVHDQSCSINVQPSCLVIPSQSCDTLQAVNGSASVNQNCSFGMNAIIDYSLLSQKSNNSVSASQFSGGDTKTQAVLYAHTTPSTCSMSSINGSIPQLQNSTLTFGGARPLFSPLPMSDRQDPYGLKSGDSLDQVCLRNIGFIGKGTCIPNRFVQNEIESSVSDFSQMKVNVDSTGNTLKEEPNFINMQKVSRRPIFGRYQSCDHSSVFTE 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00272 755 Gene3D - 299 373 - -
Vimu7g00272 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 119 528 IPR045279 GO:0009736
Vimu7g00272 755 MobiDBLite consensus disorder prediction 244 262 - -
Vimu7g00272 755 MobiDBLite consensus disorder prediction 244 299 - -
Vimu7g00272 755 MobiDBLite consensus disorder prediction 489 509 - -
Vimu7g00272 755 MobiDBLite consensus disorder prediction 276 299 - -
Vimu7g00272 755 FunFam Two-component response regulator 299 373 - -
Vimu7g00272 755 SUPERFAMILY CheY-like 118 242 IPR011006 -
Vimu7g00272 755 ProSiteProfiles Response regulatory domain profile. 120 235 IPR001789 GO:0000160
Vimu7g00272 755 FunFam Two-component response regulator 119 256 - -
Vimu7g00272 755 SUPERFAMILY Homeodomain-like 300 357 IPR009057 -
Vimu7g00272 755 Pfam Response regulator receiver domain 121 230 IPR001789 GO:0000160
Vimu7g00272 755 Gene3D - 119 252 - -
Vimu7g00272 755 Pfam Myb-like DNA-binding domain 305 355 IPR001005 -
Vimu7g00272 755 CDD REC_typeB_ARR-like 121 235 - -
Vimu7g00272 755 NCBIfam myb-like DNA-binding domain, SHAQKYF class 303 352 IPR006447 GO:0003677
Vimu7g00272 755 SMART REC_2 119 231 IPR001789 GO:0000160
Vimu7g00272 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 359 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00272 Vimu-Chr7 3349086 3356645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00272 153 428 Response Regulator Gene Family AT3G16857 52.189 2.17e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu7g00272 Response_reg 2.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00272 - K14491 pvu:PHAVU_003G0170001 1045.8