Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00260 ATGGCAGAGCGCGGAGGCGGTGATCGCGGCGGTTTCGGGCGTGGCTTCGGCGGGCGCGGGCGTGGTGGTGATAGGGGTCGTGGACGCCGCCGAGGGCCTCGCCGTGAGGAGGAGGAGAAATGGGTCCCCGTTACGAAGCTCGGGCGTCTGGTGAAGGAGGGCAGAATCCGAAGCTTGGAACAGATCTACCTCCACTCCCTTCCCATCAAGGAACACCAAATCATTGACACCCTCGTTGGTCCCACCCTCAAGGATGAGGTCATGAAAATCACGCCGGTCCAGAAACAGACCCGGGCCGGTCAACGAACCCGGTTCAAGGCCTTCGTTGTTGTCGGCGACGGTAATGGCCACGTCGGTCTCGGCGTTAAGTGCAGCAAGGAGGTGGCCACCGCGATTCGCGGCGCCATCATTCTGGCGAAACTTTCCGTTATCCCCGTTAGGAGAGGGTACTGGGGCAACAAGATCGGAAAGCCCCACACCGTTCCGTGCAAGGTTACGGGTAAGTGCGGGTCCGTTACCGTGAGGATGGTTCCTGCGCCTCGGGGTTCCGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGAATTGATGATGTCTTCACCTCCTCCAGAGGATCCACCAAGACCCTTGGCAACTTCGTTAAGGTTTGTGTTATGTGGACTGTGCACTTTGCAAGTGGAGTGCTTCATTGCGCCACTTTTGATTGCTTGATGAAAACCTATGGATTCCTGACACCAGAATTCTGGAAGGAGACTCGTTTTACAAAATCCCCATTCCAAGAGTACACAGATCTGTTGGCAAAACCAACAGGGAAGACCCTTATCTTGGAGGAGGAGAGGGTGGATGCTTGA 864 0.5683 MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKVCVMWTVHFASGVLHCATFDCLMKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKTLILEEERVDA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00260 287 SUPERFAMILY dsRNA-binding domain-like 79 148 - -
Vimu7g00260 287 FunFam 40S ribosomal protein S2 40 145 - -
Vimu7g00260 287 Gene3D - 146 255 IPR014721 -
Vimu7g00260 287 Gene3D - 40 145 - -
Vimu7g00260 287 PANTHER RIBOSOMAL S SUBUNIT 35 219 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu7g00260 287 MobiDBLite consensus disorder prediction 1 39 - -
Vimu7g00260 287 SUPERFAMILY Ribosomal protein S5 domain 2-like 159 255 IPR020568 -
Vimu7g00260 287 ProSitePatterns Ribosomal protein S5 signature. 100 132 IPR018192 -
Vimu7g00260 287 Pfam Ribosomal protein S5, C-terminal domain 167 219 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vimu7g00260 287 Pfam Ribosomal protein S5, N-terminal domain 83 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu7g00260 287 ProSiteProfiles S5 double stranded RNA-binding domain profile. 83 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vimu7g00260 287 NCBIfam 30S ribosomal protein S5 36 221 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vimu7g00260 287 FunFam 40S ribosomal protein S2 146 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00260 Vimu-Chr7 3221276 3222865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00260 37 275 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 84.519 2.69e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00260 K02981 - gmx:100820352 472.241