LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00260	ATGGCAGAGCGCGGAGGCGGTGATCGCGGCGGTTTCGGGCGTGGCTTCGGCGGGCGCGGGCGTGGTGGTGATAGGGGTCGTGGACGCCGCCGAGGGCCTCGCCGTGAGGAGGAGGAGAAATGGGTCCCCGTTACGAAGCTCGGGCGTCTGGTGAAGGAGGGCAGAATCCGAAGCTTGGAACAGATCTACCTCCACTCCCTTCCCATCAAGGAACACCAAATCATTGACACCCTCGTTGGTCCCACCCTCAAGGATGAGGTCATGAAAATCACGCCGGTCCAGAAACAGACCCGGGCCGGTCAACGAACCCGGTTCAAGGCCTTCGTTGTTGTCGGCGACGGTAATGGCCACGTCGGTCTCGGCGTTAAGTGCAGCAAGGAGGTGGCCACCGCGATTCGCGGCGCCATCATTCTGGCGAAACTTTCCGTTATCCCCGTTAGGAGAGGGTACTGGGGCAACAAGATCGGAAAGCCCCACACCGTTCCGTGCAAGGTTACGGGTAAGTGCGGGTCCGTTACCGTGAGGATGGTTCCTGCGCCTCGGGGTTCCGGAATCGTGGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCTGGAATTGATGATGTCTTCACCTCCTCCAGAGGATCCACCAAGACCCTTGGCAACTTCGTTAAGGTTTGTGTTATGTGGACTGTGCACTTTGCAAGTGGAGTGCTTCATTGCGCCACTTTTGATTGCTTGATGAAAACCTATGGATTCCTGACACCAGAATTCTGGAAGGAGACTCGTTTTACAAAATCCCCATTCCAAGAGTACACAGATCTGTTGGCAAAACCAACAGGGAAGACCCTTATCTTGGAGGAGGAGAGGGTGGATGCTTGA	864	0.5683	MAERGGGDRGGFGRGFGGRGRGGDRGRGRRRGPRREEEEKWVPVTKLGRLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKVCVMWTVHFASGVLHCATFDCLMKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTGKTLILEEERVDA	287

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00260	287	SUPERFAMILY	dsRNA-binding domain-like	79	148	-	-
	Vimu7g00260	287	FunFam	40S ribosomal protein S2	40	145	-	-
	Vimu7g00260	287	Gene3D	-	146	255	IPR014721	-
	Vimu7g00260	287	Gene3D	-	40	145	-	-
	Vimu7g00260	287	PANTHER	RIBOSOMAL S SUBUNIT	35	219	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Vimu7g00260	287	MobiDBLite	consensus disorder prediction	1	39	-	-
	Vimu7g00260	287	SUPERFAMILY	Ribosomal protein S5 domain 2-like	159	255	IPR020568	-
	Vimu7g00260	287	ProSitePatterns	Ribosomal protein S5 signature.	100	132	IPR018192	-
	Vimu7g00260	287	Pfam	Ribosomal protein S5, C-terminal domain	167	219	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Vimu7g00260	287	Pfam	Ribosomal protein S5, N-terminal domain	83	147	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00260	Vimu-Chr7	3221276	3222865	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g00260	37	275	Cytoplasmic Ribosomal Protein Gene Family	AT3G57490	84.519	2.69e-146	410

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g00260	K02981		-	gmx:100820352	472.241

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