Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00251 ATGATGAAAATTTTAGGTATTAAGCAAGATGGAAGTGCTTCGTTCTTTTTTCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAGATAACAAGTCAAGATTTTGGTGATGCCCGTTGGCACAAGACTGGAAAGACTAAACCAATTGTCTTGGGTGGGGCAAAAAAAGGATGGAAAAAGATTATGGTTCTGTATGAAAATAATATAGGAGGAGGAAAAGATGAAAAAACTAATTGGGTTATGCATGAATATCACCTAGGAGCAAAAGAAGATGAAAATGATGGAGAGTACATTTTCTCTAAAGTGTTTTACCAGCAACAAGTGAAATTGGGTGATAAAGATGATCAAGATGTTACTGAAGCAACTGAATCAACAATTGTGAAGGTGGTTCCAAACACTCCCAAATTGGTGACACTTGATCCTCCTTGCAACAAAAGGCATTGTGCAAATCTGGACCAAGAACAAGAAACACATAGTCTACAGCTGTCTCAGATGGATTGTTTACATGAAATTCAAGATGATTGCCAAGAACTTGCAACTGAATCTCAAAATGAAGGGGTGGAAAATAAAGAAAGTAATGCTGAGGAAGGCTCAAAATGGTGGGACAGCCAGTCACAGAATATGTTGGACTCTCAACAACTGGTTGAAGCTCTGTCTCTGTGTGACGATCTCCTCTACAGCCAGTCTCCCAGTAGAGATGGAAAACATGATCATAAGAGCCAACCTGAAACTGAAGTTCTGAACAACCAGATCTACACATTTAGTTCTGACTTCCAACCTCACATGAAAATTAACTTGCTAATCATTCCTATTTATAATTCTGCTGACTTCCAAGTTCACAATTTATCATAA 864 0.3831 MMKILGIKQDGSASFFFHRAIKAYNTGNRKRRKITSQDFGDARWHKTGKTKPIVLGGAKKGWKKIMVLYENNIGGGKDEKTNWVMHEYHLGAKEDENDGEYIFSKVFYQQQVKLGDKDDQDVTEATESTIVKVVPNTPKLVTLDPPCNKRHCANLDQEQETHSLQLSQMDCLHEIQDDCQELATESQNEGVENKESNAEEGSKWWDSQSQNMLDSQQLVEALSLCDDLLYSQSPSRDGKHDHKSQPETEVLNNQIYTFSSDFQPHMKINLLIIPIYNSADFQVHNLS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00251 287 ProSiteProfiles NAC domain profile. 1 109 IPR003441 GO:0003677|GO:0006355
Vimu7g00251 287 Gene3D NAC domain 3 113 IPR036093 GO:0003677|GO:0006355
Vimu7g00251 287 MobiDBLite consensus disorder prediction 185 206 - -
Vimu7g00251 287 SUPERFAMILY NAC domain 8 109 IPR036093 GO:0003677|GO:0006355
Vimu7g00251 287 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 247 IPR044799 GO:0003700
Vimu7g00251 287 Pfam No apical meristem (NAM) protein 9 90 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00251 Vimu-Chr7 3103884 3108928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00251 3 113 NAC Transcription Factor Family AT4G28500 56.637 8.64e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g00251 NAM 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00251 - - gmx:100799488 363.999