Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00248 ATGGCCTCAAAACATATAGGTTTTAGCATAAAGCTGACTCTGACGGTAGTTTTTCTAACAAGCCAGGTTGTGTTGTCTGCGGATACACCAATGCCTGCTGATAAGACTCAATTGGGGCAATGGTTTTCAAATAATGTAAAGCCTTTAGAGAGCAGAAAGGGTACCCTAGATAGTGAATTAGAAGCTGCTGAACAAGGGAAGACAGTTATTAAGGTAAGCCAAGATGGGAAAGGGCAATTCAAGACCATAACTGATGCCCTTAAAAGTATACCTAGCGGAAACAAGAAGCGTGTAATTTTGCATATTGGACCTGGAACTTACAAAGAGAAAATCGTGGTTGAGGCAACAAAACCTTTCATCACCTTCTATGGGACTCCTGGGCAAATGCCAACATTGACTTATGGGGGCACGGCAAAACAATATGGCACTGTCGAAAGTGGGACATTGTCTGTTTTATCAGACTACTTTGTGGGGGCAAACATAATAGTTCGGAACTCTGCACCAAGACCTGGTCTTAACACGGTAGGAGGTCAAGCAGTTGCATTACGAATTTCTGGAGACAAAGCCACATTTTATAATTGCCAGCTTTATAGTTACCAAGACACATTGTTGGATGATGCAAATAGACATTTTTTCAAAGACTGCTTCATTGAAGGAACTGTTGATTACATTTTTGGAAGTGGAAAGTCACTATATGTGAATTGTGAACTAAGAACTCTAGGCGATGAAGGGTTTACTTTTATAACGGCACAAGCAAGAAAAAGTACGAAAGAGGATAATGGCTTCTCCTTTGTCCATTGTGAACTTACTGGAACTGGAACAGGTGTTTACTTGGGAAGAGCCTGGTATGGTTATTCCACAGTTATCTTTTCTTACTGTAACATGGGCAACATTTTCAACAAGGAAGGATGGAGTAACAACAATAAAAAGGAATTTGACAAAACTCTTTATTTTGGAGAGTATATGAACACAGGACCTGGTGCAGATTCCACAGGGCGTTCTAAATTGACAAGGAAACTTACATTATCAGAGGTTCAGAATTACCTTGGTCTTGGTATGATAGAAGGCTCAAAATGGATACTTCCTCCTCCCAAAGTATGA 1101 0.4024 MASKHIGFSIKLTLTVVFLTSQVVLSADTPMPADKTQLGQWFSNNVKPLESRKGTLDSELEAAEQGKTVIKVSQDGKGQFKTITDALKSIPSGNKKRVILHIGPGTYKEKIVVEATKPFITFYGTPGQMPTLTYGGTAKQYGTVESGTLSVLSDYFVGANIIVRNSAPRPGLNTVGGQAVALRISGDKATFYNCQLYSYQDTLLDDANRHFFKDCFIEGTVDYIFGSGKSLYVNCELRTLGDEGFTFITAQARKSTKEDNGFSFVHCELTGTGTGVYLGRAWYGYSTVIFSYCNMGNIFNKEGWSNNNKKEFDKTLYFGEYMNTGPGADSTGRSKLTRKLTLSEVQNYLGLGMIEGSKWILPPPKV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00248 366 Pfam Pectinesterase 70 346 IPR000070 GO:0030599|GO:0042545
Vimu7g00248 366 Gene3D - 64 362 IPR012334 -
Vimu7g00248 366 FunFam Pectinesterase 65 362 - -
Vimu7g00248 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 360 - -
Vimu7g00248 366 SUPERFAMILY Pectin lyase-like 67 360 IPR011050 -
Vimu7g00248 366 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00248 Vimu-Chr7 3074874 3076235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00248 8 364 Carbohydrate Esterase AT5G07420 51.955 1.69e-137 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00248 K01051 - gmx:100813174 504.982