Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00234 ATGATTAGAGTCTATCCTAGAGATATTTCTTGTTTCTTGGGCATTTCTATTCCACCCGTTGTCGGACTGACCCAATTTCTACTATCAGGCACGAGATGTTTGTACCTCAGCGTGAAGGGGGTGGTGGTGGTTGTGGTTTTTGGAGTGAGTGCAGTAGGAATGGCGATGACGCAAGGGGTGCAGAAGAACACGCTGTACGTGGGAGGGTTAGCCGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCACTCGACCAGGCTACGCAGAAGCACCGCTCATTCGGCTTCGTCACCTTTCTCGAACGCGAAGATGCCACCGCCGCCATGGACAACATGGACGGTGCTGAGCTCTATGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAAGGCGGTGAACAGGGCTGGGCCGCCCAACCTATTTGGGCGGATGCCGATACCTGGTTTGAGCGCCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGGCGGAGAATCGCGCGGCGATGCAGGCGGCGGAGGATTTGCACCGAAAACAAGTGGCTGAACAGCGAGAGGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCTGAGGTTCTACGACAATAG 675 0.5615 MIRVYPRDISCFLGISIPPVVGLTQFLLSGTRCLYLSVKGVVVVVVFGVSAVGMAMTQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDLHRKQVAEQREGEKEEEIEIKDDPMAKAEAEVLRQ 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00234 224 SMART rrm1_1 64 137 IPR000504 GO:0003723
Vimu7g00234 224 Gene3D - 54 206 IPR012677 -
Vimu7g00234 224 CDD RRM_PPIE 65 139 IPR034168 GO:0003723
Vimu7g00234 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Vimu7g00234 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Vimu7g00234 224 Coils Coil 166 193 - -
Vimu7g00234 224 SUPERFAMILY RNA-binding domain, RBD 60 150 IPR035979 GO:0003676
Vimu7g00234 224 MobiDBLite consensus disorder prediction 184 224 - -
Vimu7g00234 224 PANTHER ATPASE E1 53 224 - -
Vimu7g00234 224 FunFam Peptidyl-prolyl cis-trans isomerase 55 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00234 Vimu-Chr7 2919630 2921498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00234 50 141 Eukaryotic Initiation Factors Gene Family AT3G11400 38.043 1.40e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00234 - - gmx:100809447 306.219