Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00218 ATGGATAGTTTTGAAAGAAATGAAGACGTTCATATGATAGATGATACTTTACCTGAATTGGTTCTTACTTTGAACATGTGTTTTGACACTATGGAACAAGCAAAGAAATTTTATTCTGACTATGGAAAAAGATGTGGTTTTGGTGTTCGAACAAGAACTTCAAAAAAGGACAAGAATAATGATGTCTATTACTTGAGATTGGTATGTTCAAGGGAAGGTAAATATGTGTCTAACGTTAGGCCTGAAGTCAAGACTTTGCCTAGTCAGACCAATGAATGCCCTGCTGGAATAACAATTGCTCGAAAAGATGACAAATGGGTGGTGAGGACTGTTGTTGTTGAACATAGTCATGAGCTTTGTCCACAAAACTCGAATCTAATCCGTTCCAATAGAAAGTTGAACATGCATGCGAAACACACATTGGAAATAAACGATGATGTCGGTGTACGTATTAACAAGAGTTTTCTAAGCATGGTTGGTGAAGCGGGTGGTTATGAAAATATGCAATTTATGGAGAGAGATGCTAGGAACTTCATCGGTCAACATAGAAGGTCAGTTTGTAAGGAGGGGGATGGTCAAACACTGCTACGACACTTTTCCAAAATGAGAGACCTCAACAATGATTTCTTCTATGATCTTGAAATGGATGAAGGAAATAGAATTACAAGTGTTTTTTGGGCGGACGCCAAAAGTCGAGCTGCTTGTGAGGAATTCAGTGATGTCATGTCTTTTGATACAACTTATTTAACAAACAAATATGACATGCCTTTTGCACCATTTGTGGGAGTAAACCATCATGGCCAATCCATCCTACTTGGGTGTGGATTACTCTCATCGGAGGATACTAGGTCATTTGTGTGGTTATTCGAAACTTGGTTAAGATGTATGGGCAACAAGGCACCAGACAATATTGTAACAGACCAATGTAGGGCCATGGATAATGCAATTCATCAAACTGATCTCAAAGTGCTTGTATATGACTGTTGTTCTACATTAGAGTTTGAAATTGGTTGGAACGAACTACTCACAAAACACGACTTAGAAAATAATGAATGGTTAGCCAATTTGTACCATGATAGACACATGTGGGTGCCTTGCTACTTGAAGAATCATTTTTGGGCAGGTATGTCCACAACGCAAAGAAGTGAGGGAATGAATGCATTCTTTGATGGATTTATCAATTCCAGCACTACACTTCAACAATTTGTGGTTCAGTACGATAATGCTCTTAAATTCAAAGCCCAAAAAGAAATAGAAGCCGACTTCGCTTCCATCAATGCAACAGTTGCACGTGGTTCTCAATCACCTATTGAAAGACAATTTCAACTAGAGTACACACATGCCAAATTTGAGGAAGTACAGAATGAGTTTCGGTCTAGGATGAATTGTTTCATCAAAGACACGGTGAAGGACTGTATTTCTAACAAGTACACAGTCAAAGAAGAGTGCATGTGGGATGGAAAATGTGCCGCCAAATATTACCATGTAGAATTTGATCCTATTACAAATGATACAACCTGCTCTTGCCTACTTTTTCAATTTAAAGGTATTATATGTTGGCATTGCCTATTGGTTCTTGGTCAAGAAGATGTACAAAATGTCCGCGCCAAATATGTTCTCCGCCGTTGGAGCAAAAATATCAGAAGAAAACACACACTGATTAGAGCAACTTATAGTTCTTTGCATCAAGAACCAAAGATGCAAAGATACCAATTGTTGTGTAAGAGGTTCTATGACATAGCTGAGGCCGCATGTGAATCTGAATCGACATCTCATGACTTGGAGAAAGATTTGAGTTGTCTTGCTAAAAAGTTTGGAGTCTCTTCATCATTAAGAAATAACATTATAAGTGATGGAGGACAACTTAGGTATGACAATCCAGTTTTCGATACTCCATCGTACACCGCATGTGAAAGTAGTGATGTACTTGTTCGCAGTCCCGTTGCAGTGAAACGTAAAGGCCGACCAAGAACTAACCGATTAAAGTCAACTGTTGAAACAATAAGTAGAAAAAGGAAAACCACATCAAGGAAGCTACCGTCAACAACAAACGTTGCGCAAAATGAAACAACATCATGTACTGTTACACAATCGGAAGATGACCTTCGTTACTGTACCGAAACGCAAGAACTATCACAACTACCACAAATGCCTTCACTTGGGTTTGTGTCATTGTCATCTGCTATGACTGTTGTAAGCGATTACAACAGCATGTCAGCCAATAGTTGTTATACTGCTGCACCCACGTTTAATAGACTCCAAATCCTCTCTCCACCCACGTCCACCCAGACAGTTTCATAA 2301 0.3903 MDSFERNEDVHMIDDTLPELVLTLNMCFDTMEQAKKFYSDYGKRCGFGVRTRTSKKDKNNDVYYLRLVCSREGKYVSNVRPEVKTLPSQTNECPAGITIARKDDKWVVRTVVVEHSHELCPQNSNLIRSNRKLNMHAKHTLEINDDVGVRINKSFLSMVGEAGGYENMQFMERDARNFIGQHRRSVCKEGDGQTLLRHFSKMRDLNNDFFYDLEMDEGNRITSVFWADAKSRAACEEFSDVMSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTRSFVWLFETWLRCMGNKAPDNIVTDQCRAMDNAIHQTDLKVLVYDCCSTLEFEIGWNELLTKHDLENNEWLANLYHDRHMWVPCYLKNHFWAGMSTTQRSEGMNAFFDGFINSSTTLQQFVVQYDNALKFKAQKEIEADFASINATVARGSQSPIERQFQLEYTHAKFEEVQNEFRSRMNCFIKDTVKDCISNKYTVKEECMWDGKCAAKYYHVEFDPITNDTTCSCLLFQFKGIICWHCLLVLGQEDVQNVRAKYVLRRWSKNIRRKHTLIRATYSSLHQEPKMQRYQLLCKRFYDIAEAACESESTSHDLEKDLSCLAKKFGVSSSLRNNIISDGGQLRYDNPVFDTPSYTACESSDVLVRSPVAVKRKGRPRTNRLKSTVETISRKRKTTSRKLPSTTNVAQNETTSCTVTQSEDDLRYCTETQELSQLPQMPSLGFVSLSSAMTVVSDYNSMSANSCYTAAPTFNRLQILSPPTSTQTVS 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00218 766 SMART 26again6 505 532 IPR006564 GO:0008270
Vimu7g00218 766 Pfam SWIM zinc finger 494 526 IPR007527 GO:0008270
Vimu7g00218 766 Pfam MULE transposase domain 241 318 IPR018289 -
Vimu7g00218 766 ProSiteProfiles Zinc finger SWIM-type profile. 494 530 IPR007527 GO:0008270
Vimu7g00218 766 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 604 IPR031052 GO:0006355
Vimu7g00218 766 Pfam FAR1 DNA-binding domain 36 120 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00218 Vimu-Chr7 2694859 2697512 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu7g00218 MULE 5.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00218 - - var:108341250 1140.18