Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00209 ATGGGTTGGGATTTAATTAGGGCTGGCACTTGCTCAGAGCTAGCAACCACGGCAAACGGCAGTACAAAGTCGACGGCAGACGACGGCGCATGGTGGACGGCAGCACACAGTGAACGACAGCACAAAGTAGAGTCAACGATACTTGACGGCAGCGGTGGTACAAGCGGCGAAGAAGAATCAAGCGCTTTTCCGACGCAGACAGTGTCTTCTCGGCATGTCGGGAAACAAGGCTGTGTCAGGCCCATAAAGTGCGTCCGACACCGCGTTGTGGACGCTCCCGACCGGAGTACTTATCCGGAACTCTTCCGAAGCGGGGAAGCGTGGGTTGAAGGCTGTGTCGGAGCTTCATTGGACTTATCCACTCTCAGACATCTTATGTGTGCAGAGATGGAAAGCTGTACCAGCAACAATAGTGACAACAACAGTCACTGGAGAGCCGAGGAAGCCATTGGTGGCAACGCTGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCTTCATTTCTCTCAAGAGGCACAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGCTGTACGGTCCACCAGGAACGGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGTGGGGCACATTTGACAATTATCAGTCCCCACACTGTTCACAGAGCACATGCTGGTGAGAGTGAGAGAATTCTCCGTGATGCTTTTTCTGAGGCATCATCTAATGTAGCCTGGGGCAAGCCATCTGTTATCTTTATAGATGAAATAGATGCGTTGTGTGCTCGCCGAAGTTCCAAAAGGGAACAAGATGTTCGACTTGCCTCTCAACTATTTACTTTGATGGACTCAAATAAACCATCCTATTCTACACCAGGCGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATAGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGATCCCAGTATTGACTTAAAGTCTATTGCTGCGTTGTGCAATGGTTATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGATTGCAATTAAACGATATTCAAATGCAGAAGATGCTAGTAATTTCAGTCTAACAATGGAAGATTGGAAGAATGCAAGGTCTGTTGTTGGTCCCAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGAAGACATTGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTCGAATGGCCTATTAAGCATTCTGCTGCATTTTTAAGATTAGGAATATCCCCTGTTCGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCGGCTGCACATGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGCGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTACTTCGGAAAACATTTCATAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGAAAACTAAAGGTTGTTTTGTGGAGCCTATCTATTACCTAGAGAACCCACTGTCCACTGTCACTGTTGCTGGCCTCCGTTTATTTTCAACTGCCTCCAGTGACCACCATCAGTTTCTGAGTACCAAATCTAGTGCATCTCGCCAAGCAACAGAGAACCCCAAAAGTCACAGACTAAATCACATGCCCCCTCTTTTCACACTCCAACCAGGCACATTGAAGCCGTGCACCACCCTCTGGTCATTGAAGGGTGACAGTTCAAGCAATAGTGCTACAGTTGGGGAGAGACTTTTATCTACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGACGCTGCACTCATGCGTCCTGGGCGTTTTGATCAGGTTCTGTATGTACCACCACCTGATTTAGAGGCTAGATACGAGATACTTTGTGTTCATACGCGAAAGATGAAAACAGGTCATGATGTTGACCTCAGAAGGCTAGCAGAAGACACAGAACTGTTTACAGGTGCTGAACTGGAGGGACTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCCATTGTGTTTGATCGCCATTTCCAGATTGCAAAGAGTTCTTTAAAACCAGCTTTAACAAAAGCAGAAATTGACTCGTACTCATCTTTCATGAAGACCTCATCTCGAGCTTTGCCAAGCCACTCGGAACCAGGTTTGAAAGGAGACAAGGGCAAAAGGAACAGGTCAGATTCTTTGTCTTTGGTAAAAATTTGTGTTGTCAGCTGTTTGTTAGTGGCTGCTGCTGCTGAATACATATATCGTGTATGGGGAAACCAAAGTGTACATAACATAGCTACCTGA 2463 0.4608 MGWDLIRAGTCSELATTANGSTKSTADDGAWWTAAHSERQHKVESTILDGSGGTSGEEESSAFPTQTVSSRHVGKQGCVRPIKCVRHRVVDAPDRSTYPELFRSGEAWVEGCVGASLDLSTLRHLMCAEMESCTSNNSDNNSHWRAEEAIGGNAEALQALRELIIFPLHFSQEAQKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHTVHRAHAGESERILRDAFSEASSNVAWGKPSVIFIDEIDALCARRSSKREQDVRLASQLFTLMDSNKPSYSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLDPSIDLKSIAALCNGYVGADLEALCREATMIAIKRYSNAEDASNFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFLRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFHRARLAAPSIIFFDEADVVAAKRKTKGCFVEPIYYLENPLSTVTVAGLRLFSTASSDHHQFLSTKSSASRQATENPKSHRLNHMPPLFTLQPGTLKPCTTLWSLKGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCVHTRKMKTGHDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISAAIVFDRHFQIAKSSLKPALTKAEIDSYSSFMKTSSRALPSHSEPGLKGDKGKRNRSDSLSLVKICVVSCLLVAAAAEYIYRVWGNQSVHNIAT 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00209 820 FunFam Cell division control protein 48 homolog B 142 320 - -
Vimu7g00209 820 MobiDBLite consensus disorder prediction 565 589 - -
Vimu7g00209 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 403 IPR027417 -
Vimu7g00209 820 FunFam spermatogenesis-associated protein 5-like protein 1 670 756 - -
Vimu7g00209 820 Gene3D - 322 402 - -
Vimu7g00209 820 MobiDBLite consensus disorder prediction 45 68 - -
Vimu7g00209 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 746 IPR027417 -
Vimu7g00209 820 ProSitePatterns AAA-protein family signature. 639 657 IPR003960 GO:0005524|GO:0016887
Vimu7g00209 820 MobiDBLite consensus disorder prediction 762 781 - -
Vimu7g00209 820 CDD RecA-like_CDC48_NLV2_r1-like 149 319 - -
Vimu7g00209 820 Gene3D - 403 551 IPR027417 -
Vimu7g00209 820 SMART AAA_5 181 323 IPR003593 GO:0016887
Vimu7g00209 820 SMART AAA_5 450 671 IPR003593 GO:0016887
Vimu7g00209 820 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 189 208 - -
Vimu7g00209 820 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 617 636 - -
Vimu7g00209 820 MobiDBLite consensus disorder prediction 47 68 - -
Vimu7g00209 820 Pfam ATPase family associated with various cellular activities (AAA) 454 526 IPR003959 GO:0005524|GO:0016887
Vimu7g00209 820 Pfam ATPase family associated with various cellular activities (AAA) 185 319 IPR003959 GO:0005524|GO:0016887
Vimu7g00209 820 Pfam ATPase family associated with various cellular activities (AAA) 611 668 IPR003959 GO:0005524|GO:0016887
Vimu7g00209 820 Pfam AAA+ lid domain 691 735 IPR041569 -
Vimu7g00209 820 Pfam AAA+ lid domain 343 391 IPR041569 -
Vimu7g00209 820 Gene3D - 601 670 IPR027417 -
Vimu7g00209 820 Gene3D - 135 320 IPR027417 -
Vimu7g00209 820 Gene3D - 671 762 - -
Vimu7g00209 820 PANTHER AAA-FAMILY ATPASE 102 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00209 Vimu-Chr7 2588974 2613130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00209 603 771 Calmodulin-binding Proteins AT3G56690 40.237 4.99e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00209 - - vra:106755317 763.837