Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00200 ATGGGAAAAAGAGTTGCTTCCTTTGTTCTTCCCTACAAAGCCTTGTTCTTCTCCTCCACCGCTGAAACCCCTAGCCTTTACTCCTTCCTCCAGCCCTCAGTCTTTGCCCTCACCAAAAACAAGCAGCAACCCATTTCAGAAGGCTCCCTAAAGGCACCAACTTGCCTCTCACCTTCCCAACTCTCCACTCTCCAAACCACGCTCCACAAGTCCCTTCTAAGCAGCAACACTGATGAGGCATGGAAGTCCTTCAAGGCACTCACCACCCACCAAGCCTTCCCTCCCAAACCCCTCACCAACTCCCTTCTCTCTCACCTCTCCTCCCTTGGTGACACCCTCAATCTCAAGAGGGCATTTGCCTCTGCTCTCTTTCTCATGGAGAAGAACCCCTTGTTGCTCCAACATGACACCCTCCACCACATGCTCCTCTCCATGAAGGGTGCCAACACTGCAGCCCCTGCATTTGCCCTTGTCAGGTCCATGCTCAGGTTCAGGTTATTTGTTCCCTTTCATGTTTGGGGCTCTGTGCTTGTTGAGATCAGTAGGAATTGTGGTAACCTTGCTGCTTTCATGAGGCTCTTTGAGGAGAATTGTAGGGTAGCTCTTGAGGAGAGAGTTGAGTTCATGAAGCCTGATGTTGGTGCTTGCAATGCAGCACTGGAAGGTTGCTGCTGTGAGCTTGAGTCTGTAAGTGATGCTGAGAGGATTGTGGAGACAATGTCAAGTTTAGGGGTTAGGCCTGATGAGTTCAGTTTTGGGTTTCTGGGGTATTTGTATGCACTCAAGGGATTGGAAGAGAAGATTAGGGAGTTAGAAGTTTTGATGGGTGGCTTTGGCTGTTTGAACAAGAAGAGTTTTTATTGTAATTTGATTAAGGGTTACGTTAAGTCTGAGAATTTGGCTTCTGTGGAGGCAACTATTATTAGATTTCTGAATGATGGATGTGGGAAGGATTGGGGTTTTGGTGTTGAAACTTTCTGTGAAGTGATTAAGGTTTATTTTCAGAAGGGAAATATCAAGGGGTTGGCTGATTTGATTGTTAAAGCTCAGAAGATAGAGGCTTCAAATATTGTGGTTGATAGGTCTATAGGGTATGGAATTGTTAATGCGTGTGTTAGTATTGGACTATCTGATAAAGCACATAGTATTCTTGATGAGATGAATGTTCAGGGGGCCTCTGTGGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGTAAAGAAAATAGAACTGCTGAGGCTACTCAATTGGTGATGGAGATTAGTAATTCCGGTCTTCAGTTGGATGTGGGAACCTATGATGCTTTGATAGAAGCATCCATGTGCAGCCAAGATTTTCAGTCAGCGCTTTCACTGTTTAGGGACATGAGAGAGGCAAGGATTCCTGACTTGAAAGGGAGTTACTTAACTATAATGACAGGTTTGATGGAAAAACATCGGCCTGAGTTGATGGCAGCTTTCTTGGATGAGGTGGTTGGGGATCCTAGGATTGATCTAGGTACTCATGATTGGAATTCTATCATCCATGCTTTCTGTAAGGCTGGGAGACTTGATGATGCGAGAAGAACTTTTAGAAGGATGATGTTCCTGCAGTTTGAGCCAAACGATCAGACATACTTGTCTATGATTAATGGATATGTCTTGGCTGAGAAATATTTTCTGGTGCTGATGTTGTGGAACGAGGTTAAGAGGAAGCTATCCATGGATGGGCAGAAGGGGATCAAGTTTGACCATAATTTGGTTGATGCGTTCCTTTATGCTATGGTCAAGGGTGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAAGCTAATGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAGGGTGGCAAAGTTAAGGAAAAGAAATTTTAGAAAAATGGAAGCACTTATTGCTTTCAAGAACTGGGCTGGCTTAAATACCTGA 1968 0.4431 MGKRVASFVLPYKALFFSSTAETPSLYSFLQPSVFALTKNKQQPISEGSLKAPTCLSPSQLSTLQTTLHKSLLSSNTDEAWKSFKALTTHQAFPPKPLTNSLLSHLSSLGDTLNLKRAFASALFLMEKNPLLLQHDTLHHMLLSMKGANTAAPAFALVRSMLRFRLFVPFHVWGSVLVEISRNCGNLAAFMRLFEENCRVALEERVEFMKPDVGACNAALEGCCCELESVSDAERIVETMSSLGVRPDEFSFGFLGYLYALKGLEEKIRELEVLMGGFGCLNKKSFYCNLIKGYVKSENLASVEATIIRFLNDGCGKDWGFGVETFCEVIKVYFQKGNIKGLADLIVKAQKIEASNIVVDRSIGYGIVNACVSIGLSDKAHSILDEMNVQGASVGLGVYIPILKAYCKENRTAEATQLVMEISNSGLQLDVGTYDALIEASMCSQDFQSALSLFRDMREARIPDLKGSYLTIMTGLMEKHRPELMAAFLDEVVGDPRIDLGTHDWNSIIHAFCKAGRLDDARRTFRRMMFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSMDGQKGIKFDHNLVDAFLYAMVKGGFFDAVMQVVEKANEMKIFVDKWRYKQAFMETHKKLRVAKLRKRNFRKMEALIAFKNWAGLNT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00200 655 Pfam PPR repeat 368 388 IPR002885 -
Vimu7g00200 655 NCBIfam pentatricopeptide repeat 505 536 IPR002885 -
Vimu7g00200 655 Pfam PPR repeat family 505 547 IPR002885 -
Vimu7g00200 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Vimu7g00200 655 PANTHER BNAC05G43320D PROTEIN 18 654 - -
Vimu7g00200 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Vimu7g00200 655 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Vimu7g00200 655 Gene3D Tetratricopeptide repeat domain 393 462 IPR011990 GO:0005515
Vimu7g00200 655 Gene3D Tetratricopeptide repeat domain 463 627 IPR011990 GO:0005515
Vimu7g00200 655 Gene3D Tetratricopeptide repeat domain 137 352 IPR011990 GO:0005515
Vimu7g00200 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00200 Vimu-Chr7 2466701 2468668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00200 209 607 Glycosyltransferase AT1G05670 19.307 3.17e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00200 - - gmx:100811600 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00200 7 2466701 2468668 Vimu7g00200 7 2466701 2468668 ECH