Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00194 TTGCATAGCATAAGATACGACACCGTCTCACCATCTTCTTCGCTGCACCCATCCAGCATGTTTTTCTCTGTGTCTACTGGTTCTTCTGCGGCATTGTCTTTGCCACTCAGATGCAATGCCAAAATCTCTTCTCAACGGGTTGTTGCTGCTGATGCCTTCCCTTCCTTTCTCCCCAGAGAAATGCACACCATTGAAGACCCTTTTGCCAGAAAATTCGCCATGCGGATTCAGAGGCTACCTGTGCCTGTAAATATTTCATCTTTTTACTTTCTTCAGTTCCTTGCCTCTTCCTTTGGTATTCTGCATACTGTTTTTGCATCTTTGTTGTGTAAAGTTAAAAGGGTTAGGTTCTCAGAAAATCCCATCATGAGTAGCTGTGTGAAGCCAATGGTGCAGAGCAAGGAAACTCCAGTTGTTCTTCTACATGGTTTTGACAGCTCTTGTTTAGAATGGAGATATGTGTTACCATTGCTTGAGGAATCTGGTATTGAGACCTGGGCCATTGACATTCTTGGTTGGGGTTTCTCTGATTTAGAAAAACTTCCTCCATGTGATGTGGTATCAAAGCGTGACCACTTCTACCAGTTTTGGAAATACTACATCAGAAGGCCAATGACATTAGTTGGACCAAGCCTTGGCTCTGCTGTTGCCATTGACTTTGCAGTCAATTATCCCGAAGCTGTGGAGAAGCTTGTTCTGATTGGTGCTAGTGTATATGCAGAGGGAACTGGAAAGCTGGCAACCTTACCCAGATCAGTAGCCTATGCTGGGGTTAATTTATTGAAGAGCTTTCCGTTACGCCTTTATGCCACCTATTTGACCTTCACAAACATTCCCTTCAGCACTAGCCTTGATTGGACTAATGTTGGTCGGTTGCATTGTTTATTGCCTTGGTGGAATGATGCTACTGTGGATTTTATGACAAGTGGTGGTTACAATGTTTCTCCTTTGATAGGAAAGGTAAAGCAGAAAACACTGATAATATGGGGTGAAAATGACCGCATCATCAGCAATAAATTTGCGGTGCAACTCCACTGTGAATTACCTGATGCAACAATTCGCCAAATACCTCATTGTGGTCATCTTCCTCATCTAGAAAGACCAGACTCTACCATCAAATTAATTGTTGAATTTGTGCAGAGAGAAGAGGCTAAGCAATTGAACCCATATGTTGCAAAAGTTTGA 1185 0.4278 MHSIRYDTVSPSSSLHPSSMFFSVSTGSSAALSLPLRCNAKISSQRVVAADAFPSFLPREMHTIEDPFARKFAMRIQRLPVPVNISSFYFLQFLASSFGILHTVFASLLCKVKRVRFSENPIMSSCVKPMVQSKETPVVLLHGFDSSCLEWRYVLPLLEESGIETWAIDILGWGFSDLEKLPPCDVVSKRDHFYQFWKYYIRRPMTLVGPSLGSAVAIDFAVNYPEAVEKLVLIGASVYAEGTGKLATLPRSVAYAGVNLLKSFPLRLYATYLTFTNIPFSTSLDWTNVGRLHCLLPWWNDATVDFMTSGGYNVSPLIGKVKQKTLIIWGENDRIISNKFAVQLHCELPDATIRQIPHCGHLPHLERPDSTIKLIVEFVQREEAKQLNPYVAKV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00194 394 PRINTS Epoxide hydrolase signature 142 160 IPR000639 GO:0003824
Vimu7g00194 394 PRINTS Epoxide hydrolase signature 356 378 IPR000639 GO:0003824
Vimu7g00194 394 PRINTS Epoxide hydrolase signature 162 177 IPR000639 GO:0003824
Vimu7g00194 394 PRINTS Epoxide hydrolase signature 221 234 IPR000639 GO:0003824
Vimu7g00194 394 Gene3D alpha/beta hydrolase 128 388 IPR029058 -
Vimu7g00194 394 PANTHER HYDROLASE 34 382 - -
Vimu7g00194 394 Pfam Alpha/beta hydrolase family 138 371 IPR000073 -
Vimu7g00194 394 SUPERFAMILY alpha/beta-Hydrolases 136 380 IPR029058 -
Vimu7g00194 394 PRINTS Alpha/beta hydrolase fold signature 207 220 IPR000073 -
Vimu7g00194 394 PRINTS Alpha/beta hydrolase fold signature 325 339 IPR000073 -
Vimu7g00194 394 PRINTS Alpha/beta hydrolase fold signature 162 177 IPR000073 -
Vimu7g00194 394 PRINTS Alpha/beta hydrolase fold signature 221 234 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00194 Vimu-Chr7 2382307 2388249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00194 137 379 Acyl Lipid Metabolism Gene Families AT3G10840 23.567 8.79e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00194 - - gmx:100800197 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00194 7 2382307 2388249 Vimu7g00194 7 2382307 2388249 ECH
Vimu11g02284 11 39673199 39682577 Vimu7g00194 7 2382307 2388249 PCT