Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00193 ATGGATGGTGCTCTTTACTGTGTATGTAAAGATGGTGTGGGTGATCAAGCTCTTCAGAAAGCTATAGATTATGCATGTGGTGCAGGAGCTGATTGTTCACCTATTCTTCAAAATGGAGTATGTTACCAACCTAACACTGTGAAGGACCACTGCAACTATGCTGTTAATAGCTATTTCCAGAGAAAGGGTCAGGCTCAGGGAAGCTGTGATTTTGCTGGTGCTGCCACCCCAAGCCAAAATCCACCTAGTAAGTGGCCACCACTTTCTAGTCACCTTAAAAAATTTTGCACTTTCTTGACAAAATTCCCTTTTTTTCTAATTCTTCTCTGTTTGTTTGATCTGCAGCTTCAGCATCTACATGTGTTTACCCTTCAAGCCCTGGGTATGTTCTTGATCAAGGATCTTGCTGATTTGTTTAAATTAATCCGCAATCATTCATTTATTTATCTGAATTTCAAGTTCAGTTTTTTTATTTAA 477 0.3899 MDGALYCVCKDGVGDQALQKAIDYACGAGADCSPILQNGVCYQPNTVKDHCNYAVNSYFQRKGQAQGSCDFAGAATPSQNPPSKWPPLSSHLKKFCTFLTKFPFFLILLCLFDLQLQHLHVFTLQALGMFLIKDLADLFKLIRNHSFIYLNFKFSFFI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00193 158 SMART X8_cls 5 98 IPR012946 -
Vimu7g00193 158 FunFam Glucan endo-1,3-beta-glucosidase 4 1 91 - -
Vimu7g00193 158 Pfam X8 domain 6 76 IPR012946 -
Vimu7g00193 158 Gene3D - 1 100 - -
Vimu7g00193 158 PANTHER BETA-1,3 GLUCANASE 4 98 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00193 Vimu-Chr7 2370487 2371879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00193 1 82 Glycoside Hydrolase AT2G05790 46.988 9.62e-21 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00193 - - vra:106755264 173.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02285 11 39673516 39675117 Vimu7g00193 7 2370487 2371879 PCT