Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00179 ATGATGTCGTATCAATCAATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCGTGTGGGAAGTCTCTGGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGCAGAGAGGAGCAATGCTACTAATGGTATGTTCAAGTTGAATGGGCGGGGAAAGAGGAAGAGAGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGTGGCGGTGGTGGGCCTACTTATGGTCTTAGAGAGAATCCCAAGAAGACCACGAGGTTTGTGCATTCCAATTCCAGTTTGCAGCTTGAAAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGCCACTCTGAAAAGGACAAGGGAGCCAACAGGTTTGAGAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGCTATGGACAGTCAATCTGACACTGAAACTTCTACGCCAAGGAGGTCCAAGAGAATGAGGTTTAAGACTCTTAGCAATAGCAACAACCAAGCTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGTTAAGTCACCTTCTCCGGACACCAAGGTTACTATGACGAATAGTGATGATAAGAACTTTATGTCTGGTGCTTATGTGGAGAAGAAGAAGTTGGAGCAGTCCAAGAAGTTTAAGTATGCTGAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTGGGGTGCTTTTCTGGGTTTGAGGATTATGATGTTGAGTCGAGGAAAGTGCCAAGAGGGAGCATTGAATTTAAGAAATTTGTTTTGGAGAATTGGGAGAATGATAGACAAGATGGTGGGGCTGCAAGGAAATTTGATTCAAAGAAAAGTAAGAAATCCAACTATGATTCTCTTGGCCAGAATTTAGTAAGGGTTTCTAGCAGGAAGATGGGGAATGGTTCTGCCATTGATAAGGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGATATGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCAGCTCCGAAGGCTTACAGCAACAGAAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAGTGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTAGTGATAAGGCCAGGAGCTGCTGCTGTTCCTTGCCTCATTGATCTCAACTTACCAGCACCAGTTGATGAATAG 1503 0.4385 MMSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALGNAERSNATNGMFKLNGRGKRKRDLGSEENGGGGGGGGPTYGLRENPKKTTRFVHSNSSLQLEKFCKECGKGFLSLKALCGHMACHSEKDKGANRFESSSSGFAEKQKLAMDSQSDTETSTPRRSKRMRFKTLSNSNNQAQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFSLFTESSDNNSVVLEVKSPSPDTKVTMTNSDDKNFMSGAYVEKKKLEQSKKFKYAEVGYDSDNSDSGYFRYGPKEVDSTDSNNGNFKNEVQSSKVGCFSGFEDYDVESRKVPRGSIEFKKFVLENWENDRQDGGAARKFDSKKSKKSNYDSLGQNLVRVSSRKMGNGSAIDKVNKYECLTSERDNGYDDSAYESDENSTDSDSYPAPKAYSNRNLSGQKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAAAVPCLIDLNLPAPVDE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00179 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 445 467 IPR013087 -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 51 88 - -
Vimu7g00179 500 Pfam C2H2-type zinc finger 444 467 - -
Vimu7g00179 500 Pfam C2H2-type zinc finger 108 130 - -
Vimu7g00179 500 Pfam C2H2-type zinc finger 12 35 - -
Vimu7g00179 500 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 138 160 - -
Vimu7g00179 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Vimu7g00179 500 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 500 - -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 410 430 - -
Vimu7g00179 500 Gene3D Classic Zinc Finger 2 133 - -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 399 441 - -
Vimu7g00179 500 SUPERFAMILY beta-beta-alpha zinc fingers 8 36 IPR036236 -
Vimu7g00179 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Vimu7g00179 500 SMART c2h2final6 445 467 IPR013087 -
Vimu7g00179 500 SMART c2h2final6 106 128 IPR013087 -
Vimu7g00179 500 SMART c2h2final6 12 34 IPR013087 -
Vimu7g00179 500 ProSitePatterns Zinc finger C2H2 type domain signature. 447 467 IPR013087 -
Vimu7g00179 500 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Vimu7g00179 500 SUPERFAMILY beta-beta-alpha zinc fingers 107 467 IPR036236 -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 173 188 - -
Vimu7g00179 500 MobiDBLite consensus disorder prediction 132 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00179 Vimu-Chr7 2240490 2241992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00179 5 500 C2H2 Transcription Factor Family AT1G26610 40.706 2.76e-97 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g00179 zf-C2H2_6 1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00179 - - gmx:100805520 630.172