Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00175 ATGGGAGACAAGGACAGAGCAACCTCCGATCCCGCCGCTGTTGAGTTTGCCGGCGACACGAGTTGGACATTCGCCGCCGATGGCTCAGACGCTGCCTACTTCTTCTCCGGCGACGGAGAGCGAAGCGTACTCAGGGAATTCGGGTGGAACCTCGAACCGGACCAGTTGAACCGGATCGGCACTGACGATGGATTGTGGATGCCGGTTCAATCCTCTCTGACCTGTTCGATTGAACCGGCCGCTGCTGCATCGTCGCGGTCGAATAACCAGTCGGTGTCGTCGAGCTCCAGTGAGGATCAGCCGGAGAAATCCACCGTCTCTGATGAGAAACCGCCTGAGATACCGATTAAAAGTAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGCCCATTCCCTAGGAGCTACTACCGCTGCACAAACAGCAAATGCACGGTGAAGAAGAGGGTTGAACGCTCTTCCGAGGACCCAACGATTGTGATTACCACATATGAAGGTCAACACTGTCATCACACCGTTGGATTTCCTCGAGGGGGAATCATTTGTCACGAGGCTGCTGCCTTTGCGGGCCAGTTGGCTCCTACAATGTCACAGTTTTATTATCCAATTCATTTACCCAGAGAGACTAATAATATAAATACTCTCAGCTCCATTTCTCCGCCATGCCAAGCACAGGATGATGCATCTGGGGGATCCAACACTGTAATGCCAGCTGATGCATCGTCACTGCAGCCTCCCACTGATGAAGGGTTGCTTGGAGATATTGTACCTCCGGGAATGCGTATCAGATGA 879 0.5176 MGDKDRATSDPAAVEFAGDTSWTFAADGSDAAYFFSGDGERSVLREFGWNLEPDQLNRIGTDDGLWMPVQSSLTCSIEPAAAASSRSNNQSVSSSSSEDQPEKSTVSDEKPPEIPIKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIICHEAAAFAGQLAPTMSQFYYPIHLPRETNNINTLSSISPPCQAQDDASGGSNTVMPADASSLQPPTDEGLLGDIVPPGMRIR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00175 292 MobiDBLite consensus disorder prediction 80 130 - -
Vimu7g00175 292 FunFam WRKY transcription factor 57 128 202 - -
Vimu7g00175 292 Gene3D WRKY domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00175 292 MobiDBLite consensus disorder prediction 243 270 - -
Vimu7g00175 292 MobiDBLite consensus disorder prediction 102 119 - -
Vimu7g00175 292 ProSiteProfiles WRKY domain profile. 137 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00175 292 MobiDBLite consensus disorder prediction 243 292 - -
Vimu7g00175 292 SMART WRKY_cls 142 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00175 292 MobiDBLite consensus disorder prediction 80 101 - -
Vimu7g00175 292 SUPERFAMILY WRKY DNA-binding domain 134 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00175 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 207 IPR044810 GO:0003700
Vimu7g00175 292 Pfam WRKY DNA -binding domain 143 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00175 Vimu-Chr7 2186020 2189369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00175 9 290 WRKY Transcription Factor Family AT1G69310 47.573 2.67e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g00175 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00175 - - gmx:100170676 464.536