Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00165 ATGGCCACGACAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAAGTCTCACACTGCTAAGGAAGTCAAATGGGGAGGGGATTACAAAGCAATCGTGCAGAGTCTCAGTCTACTGATTCCACCCATTTTTTCTTCTGATGAGAGTGTCTGCTGTTCTGAATGGAATGCAGCCATGGAAACGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCTTGGTGAAATATGTAGAAGTTTTATTCGACTAAAAGGTCAAGATAACCTGACTAATGTTATAATTTTAATATACCGTGGAATAAGTGGCCAAGATTATGAGAAGTTACCAGTTGGATTTTTTGATAGAAATGGAGAATTTATTCAGAGTTCTATAACAGCAAACAAGAGAATTGATGCTGGTGGAAATATACTTGGCTGTTTTTTCTTCTTGCAGGTTGTAACGTCAGATCTGAATTAG 465 0.3742 MATTRINSKHFLFWFKSHTAKEVKWGGDYKAIVQSLSLLIPPIFSSDESVCCSEWNAAMETLTGWKRDEVIGKLLLGEICRSFIRLKGQDNLTNVIILIYRGISGQDYEKLPVGFFDRNGEFIQSSITANKRIDAGGNILGCFFFLQVVTSDLN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00165 154 SUPERFAMILY PYP-like sensor domain (PAS domain) 42 144 IPR035965 -
Vimu7g00165 154 CDD PAS 39 149 IPR000014 -
Vimu7g00165 154 ProSiteProfiles PAS repeat profile. 28 79 IPR000014 -
Vimu7g00165 154 Pfam PAS fold 28 148 IPR013767 GO:0006355
Vimu7g00165 154 Gene3D PAS domain 41 152 - -
Vimu7g00165 154 SUPERFAMILY GAF domain-like 2 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00165 Vimu-Chr7 2040294 2040758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00165 1 27 Histidine Kinase Gene Family AT4G16250 62.963 2.00e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00165 K12123 - gmx:100808192 208.379