Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00130 ATGGCCGGCGGCGGAAGTGGGGACCGGCCACCGTGGAAAGAGTCGGCGCCACCTCGACCCACCATCAGTCTCCCTCCAAGGGCTGCTTCCATGGAGACCCTTTTTAATGGCGGCTTCAGTCCTGGTCCCATGACTCTTCTCTCTGGCTTTTTGACTGATGGGGATGACAGCAGCAAGTCCTTCTCTCAGCTCCTCGCCGGAGCCATGGCTTCTCCGGTGGCCTCCACCGCCCTGCACGACTCGCATGGCCTCTTTTCACCTTCCCAGATGTCATTTGGACTGACACACCAGCAGGCACTAGCCCAAGTTTCAGTGCAGGCTTCACAAGCTAACTCAAACATGCATATTCAGGCTGAACATTCATTGCCTGTATCAGTATCATCACCTACCTCATTCACACAGGTTCCTGCAGCTACTTCCAATGCTACACAACAGCTGACTCCACCCTTAACTGCAGATTCTTGGGCCACAATGACAGAATCCACTGATCATTCTCACTCTGAACAAAAGTTGCAATCTTCATCACTAAATGTTGATAAGCCTGCAGATGATGGATACAACTGGAGGAAGTATGGACAGAAACAGGTGAAGGGTAGTGAATTTCCTCGAAGTTATTACAAATGCACACATCCACACTGTCCTGTCAAGAAAAAGGTTGAGCGTTCACTTCAGGGTCATGTGACTGCAATTATTTATAAAGGAGAACACAATCATCAACGTCCTCATCCCAACAAACGCTCAAAAGATTCCGTGGCTTCAAATGAACATTCAAATATGCAAGGAAATGCTTCTGCTTATCAAGGGATGACTAAAATGGATCCAGAGTCAAGTCAGGCAACAACTGATCATCTATCAGGAAGTGACAGTGAGGAAGTAGGAAAAATCCTTTGTGTTGGTGAAAGTAAAACAGAAGCCACAAATTTGGATCCAGCATCTTCACATAGGACAGTCACTGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTTGATCTTTTAGATGATGGTTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCGAGGAGCTATTACAAATGTACAACACCAGGTTGTAAAGTCCGAAAGCATGTTGAGAGGGCTTCAACAGATCCTAAAGCTGTGATAACAACATATGAAGGAAAACACAATCATGATGTTCCAGCTGCTAAAACCAGCAGTCATGTTATGGCAAGTAACAACACTTCACAGATAAAATCACAGAATTCCAATCATGGAAAACAAAGTTTTGGAAGCAGAGATATTGGAGGCAATGAGCAACAGCAGGTTGCACGGCTAAGGTTGAAGGAGGAGCAGATAACCTAG 1341 0.4571 MAGGGSGDRPPWKESAPPRPTISLPPRAASMETLFNGGFSPGPMTLLSGFLTDGDDSSKSFSQLLAGAMASPVASTALHDSHGLFSPSQMSFGLTHQQALAQVSVQASQANSNMHIQAEHSLPVSVSSPTSFTQVPAATSNATQQLTPPLTADSWATMTESTDHSHSEQKLQSSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPHCPVKKKVERSLQGHVTAIIYKGEHNHQRPHPNKRSKDSVASNEHSNMQGNASAYQGMTKMDPESSQATTDHLSGSDSEEVGKILCVGESKTEATNLDPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCKVRKHVERASTDPKAVITTYEGKHNHDVPAAKTSSHVMASNNTSQIKSQNSNHGKQSFGSRDIGGNEQQQVARLRLKEEQIT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00130 446 Pfam WRKY DNA -binding domain 183 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 Pfam WRKY DNA -binding domain 334 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 MobiDBLite consensus disorder prediction 253 286 - -
Vimu7g00130 446 MobiDBLite consensus disorder prediction 158 179 - -
Vimu7g00130 446 FunFam WRKY transcription factor 33 320 386 - -
Vimu7g00130 446 ProSiteProfiles WRKY domain profile. 328 393 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 MobiDBLite consensus disorder prediction 233 252 - -
Vimu7g00130 446 MobiDBLite consensus disorder prediction 408 431 - -
Vimu7g00130 446 SUPERFAMILY WRKY DNA-binding domain 180 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 417 IPR044810 GO:0003700
Vimu7g00130 446 MobiDBLite consensus disorder prediction 408 446 - -
Vimu7g00130 446 SUPERFAMILY WRKY DNA-binding domain 325 393 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 MobiDBLite consensus disorder prediction 127 146 - -
Vimu7g00130 446 ProSiteProfiles WRKY domain profile. 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 Gene3D WRKY domain 318 394 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 Gene3D WRKY domain 161 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 MobiDBLite consensus disorder prediction 1 28 - -
Vimu7g00130 446 FunFam WRKY transcription factor 167 242 - -
Vimu7g00130 446 SMART WRKY_cls 182 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 SMART WRKY_cls 333 392 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g00130 446 MobiDBLite consensus disorder prediction 233 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00130 Vimu-Chr7 1678359 1682572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00130 19 65 WRKY Transcription Factor Family AT2G03340 63.265 3.05e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g00130 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00130 - - gmx:100127369 695.656