Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00114 ATGAGCACCGGCAGCAGCGGATCGTCCAAAACGATGGAGAAGGCTCGGGTGAGTCGAACGTCTCTCATTCTGTGGCATTCGCACCAAAACGACGCCGCGGCTGTGCGGAAGCTTCTTGAGGAGGATCCATCGCTGGTGAACGCTAGGGATTACGACAGCCGCACGCCGCTGCATGTGGCTTCGCTCCACGGCTGGGTCGAGGTTGCTAACTGCTTGCTCGAATTCGGTGCTGACGTCAATGCTTTGGATCGATGGAAAAACACTCCTTTGGCTGATGCAGAAGGAGCTAAAAAGTTGCCGATAATTGAGCTTTTGACGTTAAATGGAGGCTTGTCTTTTGGCCAAAATGGAAGCCATTCTGAAAAGAGCCCTGTTCTTCCCCCATTGCCTAACAAATGTGACTGGGAAGTTGACCCATCTGAACTGGACTTCTCTCATTCAGTTTGCATTGGAAAGAGGTGTATGTATGAAATTGTGTCTTCATCATACAGACTGGATGGATCTTTTGGCGAGATCTTAAAAGCCCATTGGCGTGGAACGCCTGTTGCTGTCAAACGTATTCTTCCATCTCTGTCAGATGATAGATTGGTGATTCAGGACTTCAGGCACGAGGTTAATTTACTTGTGAAACTTCGACACCCTAATGTTGTTCAATTTCTTGGAGCTGTTACAGACAAGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGAGGTGATCTTCATAAGTACCTCAAGGACAAAAGTTCTCTTAGTCCATCAGCAGCTATCAACTTTGGCTTGGATATTGCTAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATCATCCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCCGACCATTTAAAAGTTGGTGATTTTGGACTTAGTAAGCTTATTAAGGTCCAAAGTTCTCATGATGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAAAAGGTTGACGTGTTCTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCTCCTTTTTCAAATTATGAACCATATGATGGAGCCAAATATGTGGCAGAAGGACACAGGCCTTCATTTCGGTCAAAGAGTTATACCTCTGACCTTCGAGATTTAACAGAGGAGTGCTGGTCTTCTGACATAAGTCAAAGACCTTCGTTCATAGAGATCCTTAAACGGCTTGAAAAGATCAAGGAAAATTTGCCTTCAGATCATCACTGGAGAGTGTTCGCTTCATGA 1305 0.4467 MSTGSSGSSKTMEKARVSRTSLILWHSHQNDAAAVRKLLEEDPSLVNARDYDSRTPLHVASLHGWVEVANCLLEFGADVNALDRWKNTPLADAEGAKKLPIIELLTLNGGLSFGQNGSHSEKSPVLPPLPNKCDWEVDPSELDFSHSVCIGKRCMYEIVSSSYRLDGSFGEILKAHWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNVVQFLGAVTDKKPLMLITEYLRGGDLHKYLKDKSSLSPSAAINFGLDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFSNYEPYDGAKYVAEGHRPSFRSKSYTSDLRDLTEECWSSDISQRPSFIEILKRLEKIKENLPSDHHWRVFAS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00114 434 SUPERFAMILY Protein kinase-like (PK-like) 166 428 IPR011009 -
Vimu7g00114 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vimu7g00114 434 PRINTS Tyrosine kinase catalytic domain signature 233 246 IPR001245 GO:0004672|GO:0006468
Vimu7g00114 434 PRINTS Tyrosine kinase catalytic domain signature 387 409 IPR001245 GO:0004672|GO:0006468
Vimu7g00114 434 PRINTS Tyrosine kinase catalytic domain signature 271 289 IPR001245 GO:0004672|GO:0006468
Vimu7g00114 434 ProSiteProfiles Protein kinase domain profile. 158 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00114 434 SMART ANK_2a 52 81 IPR002110 GO:0005515
Vimu7g00114 434 Gene3D Transferase(Phosphotransferase) domain 1 238 430 - -
Vimu7g00114 434 SMART serkin_6 163 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00114 434 Pfam Ankyrin repeats (many copies) 38 90 IPR002110 GO:0005515
Vimu7g00114 434 SUPERFAMILY Ankyrin repeat 23 109 IPR036770 -
Vimu7g00114 434 FunFam Integrin-linked protein kinase family 237 432 - -
Vimu7g00114 434 CDD STKc_MAP3K-like 167 416 - -
Vimu7g00114 434 FunFam serine/threonine-protein kinase STY46-like 137 237 - -
Vimu7g00114 434 ProSiteProfiles Ankyrin repeat region circular profile. 52 84 - -
Vimu7g00114 434 Gene3D - 9 118 IPR036770 -
Vimu7g00114 434 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 166 421 - -
Vimu7g00114 434 Gene3D Phosphorylase Kinase; domain 1 161 237 - -
Vimu7g00114 434 ProSiteProfiles Ankyrin repeat profile. 52 84 IPR002110 GO:0005515
Vimu7g00114 434 PIRSF ILK 2 434 - -
Vimu7g00114 434 Pfam Protein tyrosine and serine/threonine kinase 167 416 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00114 Vimu-Chr7 1467134 1473117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00114 2 434 MAP Kinase Kinase Kinase AT1G14000 78.291 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vimu7g00114 PK_Tyr_Ser-Thr 4.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00114 - - gmx:100789273 757.673