Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00106 CTTAGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTATCTGAGACCTGATATAAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTGGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCGAAGAGAACTGACAATGAGATAAAGAACTACTGGAACACCCACCTGAAGAAAAGGCTCGAAAAAATGGGCATTGACCCCACCACCCACAAGCCAAAAATGGAGTCTCTAATCCATTTCAAAGACGGTTCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTCGAAGCCGAAGCCAGACTCGTACGAGAATCCAAGTTGCAAGAACAAAACAACATCGTATTAACCTCTTCCTCACCACCACCACAACAACCTAGACTCATTCTCAACAAAATCACACCCCAACACCACCATCAACCCTCACTGCCACCGTGCCTCGACGTGCTCAAAGCATGGCAAAGTTCATGCTCAGAAAATAAAAACAACAACCAAAAATACTCATCACTACACGACAAGAAGAAAACCATGCATGTGCATAGCATGTATGCGATGATGCTTGCCACTGACGACCTTGAATCCCCAACATCCACTTTGTGTTTCCCTGAGAGTATGCAAATCAATAATAGTAACAATAATAGCATTATGTTGTCGACCAACCAAGTTGGGTTAATCAATGAGAGCTATTTACTCCCTCCAATTGCTGTGGAAGAGTTTATGACAAAAAGTGTAGGAACGGTGAAGGAAGATGCTTGTTGTGGCGGTGATGGTGACAGCAGTGAGTCGTGGAGGTACTTCACCAAACACAGCACTGATCGTGATGAAGAAGTGACTGAAACTGAGAAGAGAATTATGTACCAGACGATGCCATGTTTGCAAGATGATGACATAATGGTGGCTGTTGATGCATTAAGAGGTGGTGGATATTATGGTAATAATGATGATACTATTAATAATAATAATGTCGTGGCATTTACACCTCTCTCTAGCAATGTCAATATGGTTGTTGGTTTCAATAACGAGGTCCAGGATTTTGATTCCAACCAAGATTTAGCGACGGAGAACTTGGAAGTGCACTTCGAGGAGAATAAGGATTATTGGAATAGCATGCTTGGTTACAAGTGA 1161 0.4289 LRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLEKMGIDPTTHKPKMESLIHFKDGSNLSHMAQWESARLEAEARLVRESKLQEQNNIVLTSSSPPPQQPRLILNKITPQHHHQPSLPPCLDVLKAWQSSCSENKNNNQKYSSLHDKKKTMHVHSMYAMMLATDDLESPTSTLCFPESMQINNSNNNSIMLSTNQVGLINESYLLPPIAVEEFMTKSVGTVKEDACCGGDGDSSESWRYFTKHSTDRDEEVTETEKRIMYQTMPCLQDDDIMVAVDALRGGGYYGNNDDTINNNNVVAFTPLSSNVNMVVGFNNEVQDFDSNQDLATENLEVHFEENKDYWNSMLGYK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00106 386 FunFam MYB transcription factor 24 71 - -
Vimu7g00106 386 Pfam Myb-like DNA-binding domain 22 67 IPR001005 -
Vimu7g00106 386 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Vimu7g00106 386 CDD SANT 24 67 IPR001005 -
Vimu7g00106 386 SUPERFAMILY Homeodomain-like 3 77 IPR009057 -
Vimu7g00106 386 Gene3D - 1 21 - -
Vimu7g00106 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
Vimu7g00106 386 Gene3D - 23 89 - -
Vimu7g00106 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 16 IPR017930 -
Vimu7g00106 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
Vimu7g00106 386 SMART sant 21 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00106 Vimu-Chr7 1416662 1419886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00106 1 136 MYB Transcription Factor Family AT3G01140 76.389 2.55e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g00106 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00106 K09422 - gmx:100792994 537.339