Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00102 ATGGAGTGGGTACGATGGTCAATCATAGCAGCTCATCTGCCCCAAAGAACAGACAATGAGATCAAGAACTACTGGAATTCGAACATCAAGAAAAGACTCATCAGAATGGGCTTGGATCCCATTACCCACAAAGCAATAAAAAAGAACACGTTTGAAACCAGTGGTGTTGGCTATGACAACCCAAAGGACACCATCAATGTTTGCCACGTGGCTCAATGGGAGAGTGCTCGACATGAAGCTGAAGTCAGAGGATCTATGGTGCAAGCTGGATCGGGATCCTCGTATTTCTCTGGGCTAATTTTAAGCAAAATTCCAACTCAACCTTGTCTTTCATCACATTCAGTGTCAACCGAAAACAGCACAGCGTATAATATGTATGCCCTCGTGCTTGCCACAAATCATGATATTGGGTTACCTGTATCCACTTCGAGCATTCCCACGCTTCCTGCAGTTTCTAATACTCTACAAATCAGGAAAACAGAAAGTTTAGTTTCATACAAGGTTGATAATAATGACATGGGAGCCAGTAGCCAAAGTGAAACAGAAATTGAAGGTTGTGTATCAAACTTACAAGACGATGACATTATGCTGGCTGTGGAAGCATTTAGAAGAACAAGGTATGAGAGTATGAAAGAGCTGTTTAATGAATAA 651 0.4178 MEWVRWSIIAAHLPQRTDNEIKNYWNSNIKKRLIRMGLDPITHKAIKKNTFETSGVGYDNPKDTINVCHVAQWESARHEAEVRGSMVQAGSGSSYFSGLILSKIPTQPCLSSHSVSTENSTAYNMYALVLATNHDIGLPVSTSSIPTLPAVSNTLQIRKTESLVSYKVDNNDMGASSQSETEIEGCVSNLQDDDIMLAVEAFRRTRYESMKELFNE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00102 216 CDD SANT 5 29 IPR001005 -
Vimu7g00102 216 PANTHER F14D16.11-RELATED 5 181 - -
Vimu7g00102 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vimu7g00102 216 Gene3D - 3 54 - -
Vimu7g00102 216 SUPERFAMILY Homeodomain-like 5 37 IPR009057 -
Vimu7g00102 216 ProSiteProfiles Myb-like domain profile. 5 29 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00102 Vimu-Chr7 1340899 1342753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00102 5 83 MYB Transcription Factor Family AT3G01140 60.759 3.26e-25 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g00102 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00102 K09422 - gmx:100790887 271.552