Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00098 ATGGGAAGGATGCGATGCTGTGAGAAGGTAGGGTTCAAGAAAGGACCATGGACACCAGAAGAAGACAATAAGCTCCTTGCTTATGTTGAAAAACATGGCCATGGAAATTGGCGGTCAGTACCTGCCAAAGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTACCTCAAACCTGACATAAAACGAGGAAACTTCAGCTCGGAGGAAGACCACACCATTATTCAACTCCATGCTCTTCTCGGAAACAAATGGTCAATCATAGCAGCTCATCTGCCTCAAAGAACAGACAATGAAATCAAGAATTATTGGAACACCAATATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCCTCACTCACAAACCAATAAAAAGGAACAACTTTGAAGACTATGGTGGTGGTCATCATGAGCAGTCGAAGGACACCATCAACATGGATCACGTGGCTCAGTGGGAGAATGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGAATCTCACTCCTCACATCACCCTCAGCTAATGTTGAGAAAAATCCCAACACAACTTTCTCCTTCCTCTTCAGATTCACTATCAATCAAACACAACAACACAGTATACAACATGTATGACCTTATACTTGCCACAAATCGTGACCTTCCATCACCAGTATCCACATTCAGCGTCACCAGTTGGAAGCTTCCTTTAGTCTCTACCAATATTAAACTATTCACCGACACCCGAACATCGCTCTCTTCTGAGGCTGATTTTAATGTGTCTGAAACTAGTTTTCAGATAATAGAAGACCGTGTGTCAAACTTGCAAGATGATGACATCACGGTGGCTGTGGAAGCATTTACAACCGCAAGCTGCGAGAGTATTCAAGAGTTGTTAAGGGGTTCCACACTGACATGGTAG 924 0.434 MGRMRCCEKVGFKKGPWTPEEDNKLLAYVEKHGHGNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSSEEDHTIIQLHALLGNKWSIIAAHLPQRTDNEIKNYWNTNIKKRLIRMGLDPLTHKPIKRNNFEDYGGGHHEQSKDTINMDHVAQWENARLEAEARGSMLQVESHSSHHPQLMLRKIPTQLSPSSSDSLSIKHNNTVYNMYDLILATNRDLPSPVSTFSVTSWKLPLVSTNIKLFTDTRTSLSSEADFNVSETSFQIIEDRVSNLQDDDITVAVEAFTTASCESIQELLRGSTLTW 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00098 307 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu7g00098 307 CDD SANT 69 112 IPR001005 -
Vimu7g00098 307 CDD SANT 16 61 IPR001005 -
Vimu7g00098 307 SMART sant 66 114 IPR001005 -
Vimu7g00098 307 SMART sant 13 63 IPR001005 -
Vimu7g00098 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vimu7g00098 307 Gene3D - 68 136 - -
Vimu7g00098 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 244 - -
Vimu7g00098 307 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu7g00098 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu7g00098 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vimu7g00098 307 Gene3D - 13 66 - -
Vimu7g00098 307 FunFam MYB-related transcription factor 13 66 - -
Vimu7g00098 307 FunFam MYB transcription factor 68 129 - -
Vimu7g00098 307 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu7g00098 307 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00098 Vimu-Chr7 1276447 1277578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00098 1 167 MYB Transcription Factor Family AT5G15310 68.263 8.45e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g00098 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00098 K09422 - gmx:100787150 459.144