Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00094 ATGCTAACATTCACCTACTGCGGTACTCTTCCAATACTTCCTTCTTTGTATATGTTAACTCTTGGCTTGCTAACAACAACAGAAAAAGGACTGTTTCGGGTTACCTCTTACAACAGTTTGCCATTAAAAATGGGAAGGATACCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACTCCAGACGAAGACAAGAAGCTCCTCGACTACGTTCGGAAGCATGGCCATGGAAACTGGCGTTCAGTGCCTGCCAAAGCGGGTAGCAATACAACTTCTCTCTACCCTTTTTTCTCAATCATTGACTCTGCATGTTCTTGA 321 0.4424 MLTFTYCGTLPILPSLYMLTLGLLTTTEKGLFRVTSYNSLPLKMGRIPCCEKVGLKKGPWTPDEDKKLLDYVRKHGHGNWRSVPAKAGSNTTSLYPFFSIIDSACS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00094 106 SUPERFAMILY Homeodomain-like 51 88 IPR009057 -
Vimu7g00094 106 Gene3D - 54 94 - -
Vimu7g00094 106 CDD SANT 59 89 IPR001005 -
Vimu7g00094 106 PANTHER F14D16.11-RELATED 44 90 - -
Vimu7g00094 106 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 88 IPR017930 -
Vimu7g00094 106 ProSiteProfiles Myb-like domain profile. 52 91 IPR001005 -
Vimu7g00094 106 Pfam Myb-like DNA-binding domain 57 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00094 Vimu-Chr7 1214604 1214924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00094 44 88 MYB Transcription Factor Family AT3G01140 73.333 4.11e-22 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g00094 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00094 K09422 - gmx:100785734 91.6633