Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00071 ATGACCAAACCCAACTCCTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTTCAGTAAAGAGGAACATAGCGGAGATGATATACAAAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCACTGCTACAAACAAATTTAGCATTCTTAACAAGCTTGGTGAAGGGGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTCAAGAGGTTATCGCGTAGATCGAATCAAGGGAAGACGCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCACCCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAACGTAGATTGGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTGGATGAAAAATGGAGCCCTAAGATAGCAGATTTTGGTCTCGCCAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGCTATTTGGCTCCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGTTGTTGGAATTGGTCACTGGCCGGAGAAATTCGTCGTTTGATGCGAACTCCAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGAGCTATGGAAATGGTGGACCCTGCATTGTGGTCTTCAGTGATAAGTGAAGAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACTCAAGGTGATCCAAACCTGCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAACCGAACCACATGGAAGAACCAACAAGACCAGGAATGGCTGGTTCAAGATTCAGAAGAGTGTCTCACAGACAACCCTCTGCAATGTTTTCTTCTGGGGTTGATGATGACTCTCATTCACACACTGACACTGGTGATTCAAGCAACTATGGCACTAATAATAATACTACTTCTTCTGTAACATCAACAACACCAAGCTCCAGTGCTACTGCAGAAGTAGACCCCCGAGGGAAACGACCAATGCAAGGTTAG 1224 0.4592 MTKPNSFFHNLIKPFKFSFSKEEHSGDDIQNLAAQENKVFSYETLVTATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCTHASEKLLVYEYVPHKSLDKFLFKTGKKEELNWKRRLDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWSPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLLLELVTGRRNSSFDANSSAQNLLDWAYWLYKKGRAMEMVDPALWSSVISEEVEMCIKLGLLCTQGDPNLRPTMGRVVVMLSKKPNHMEEPTRPGMAGSRFRRVSHRQPSAMFSSGVDDDSHSHTDTGDSSNYGTNNNTTSSVTSTTPSSSATAEVDPRGKRPMQG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00071 407 SUPERFAMILY Protein kinase-like (PK-like) 33 323 IPR011009 -
Vimu7g00071 407 MobiDBLite consensus disorder prediction 324 407 - -
Vimu7g00071 407 Gene3D Phosphorylase Kinase; domain 1 16 127 - -
Vimu7g00071 407 FunFam Cysteine-rich receptor-like protein kinase 2 128 330 - -
Vimu7g00071 407 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00071 407 CDD STKc_IRAK 58 324 - -
Vimu7g00071 407 Pfam Protein kinase domain 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00071 407 MobiDBLite consensus disorder prediction 368 395 - -
Vimu7g00071 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vimu7g00071 407 Gene3D Transferase(Phosphotransferase) domain 1 128 336 - -
Vimu7g00071 407 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Vimu7g00071 407 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 382 - -
Vimu7g00071 407 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00071 Vimu-Chr7 904808 908635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00071 40 338 Receptor kinase-like Gene Family AT4G11530 51.827 3.52e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu7g00071 Pkinase 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00071 - - gmx:100811523 604.749