Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00031 ATGCTTTCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTTTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCTGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGTAGCATCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCATTTCTGATAAAAAGAAATCAGATTGGCTTAGATCTGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGGGCTATAGTTGACGGAAAGGCTAATAACTATGCATCAGCAATTGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACGGGACCAGTGAGAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCAGCCACGCCGAAACAGATCAGGGAGCTTATGAAGGTTGATGGCCTCACCAATGATGAAGTAAAAAGCCACTTGCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAACGGAAATTCACAAGCAGCACCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAATATGGTGCAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACATCCTCCACTTGTCACAAACACACCAATAATGAACCATTCACGTTCACAAGAAAGGCCTAATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCTACACACACAATCACAACTACTTAA 1107 0.4354 MLSRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLFGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKVASQDSVEEEEEEENEDEDEQHSHQHRKTISDKKKSDWLRSVQLWNSNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKRAIVDGKANNYASAIGKTPSSPPVPATSSTGPVRIDSRKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNGNSQAAPLFLVGNIFVQPPEYGAVATSTASGGELTTVTAPTGIYAPVAAHPPLVTNTPIMNHSRSQERPNNNNNSAQSNSPASSSSTHTITTT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00031 368 MobiDBLite consensus disorder prediction 175 214 - -
Vimu7g00031 368 Gene3D - 209 267 - -
Vimu7g00031 368 MobiDBLite consensus disorder prediction 175 195 - -
Vimu7g00031 368 MobiDBLite consensus disorder prediction 84 116 - -
Vimu7g00031 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Vimu7g00031 368 MobiDBLite consensus disorder prediction 329 368 - -
Vimu7g00031 368 MobiDBLite consensus disorder prediction 196 214 - -
Vimu7g00031 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 347 IPR044787 GO:0003700|GO:0006355
Vimu7g00031 368 MobiDBLite consensus disorder prediction 101 116 - -
Vimu7g00031 368 MobiDBLite consensus disorder prediction 331 368 - -
Vimu7g00031 368 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vimu7g00031 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Vimu7g00031 368 FunFam Myb family transcription factor 209 267 - -
Vimu7g00031 368 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00031 Vimu-Chr7 399577 401725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00031 10 347 G2-like Transcription Factor Family AT1G68670 46.910 4.79e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu7g00031 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00031 - - gmx:100819750 533.872