Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00026 ATGGAATGCATGGATGAGAGTACCACAACTGAATCACTCTCCATCACCCTTTCCCCCACCGTCTCATCTCAGGACAAGCTCCTTCTGCCTTCCTCCAACAATCTTTCTCCTCCGCCGCCCTCCACCACCTTGTCTCGCGTCGGCAGCGGCGCCAGCGCAATCCTAGATCCTGACGTCGCCGCCGGTAACACAGAGGCCGAGTCCAGGAAGCTTCCCTCCTCAAAGTACAAAGGCGTCGTGCCGCAACCCAACGGCCGCTGGGGTGCCCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCATACGACATCGCCGCGCAGCGCTTCCGCGGCAAGGACGCGGTTACCAACTTCAAGCCGGTATCCGGCGGCGCCGGAGAGGGCGACGACGAGGACGGCGAGGCCGAGTTTCTCAACTCGCATTCCAAGTCGGAAATCGTCGACATGCTCAGGAAACACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGTGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCAGCCGGAACCGGTAATTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGGGAGCAGCTGTTCGAGAAGGCGGTTACGCCGAGTGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCAGAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGCTACTCGTATTGGAATAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACTGGACCGGACAAGCAGCTCTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCGGTCGGGCCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCCAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTTTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGAAGAAGGTACAAGAACGGCGGTGCAGAGGCAAGTTGCAAAAGAGGATCAAATTCTCTCCTATTGAGAACTTCACATACACGCCTAACTTGAGCGTCGGAGCACCTTTTCAGAACCGATTGGTTGAGGCAAGCACAAAGTGTACGGTCCAGAACCAGAAGAAGCAGATAGAAAGACAGCAGACGACGTCATCAAGACTCCCTATGGTGACCACCAGAAGCATGGATGGGAACAACACTGACCCTATAGAGCAATTGAGACAACTCCAGAATCAATTGGAGCAGCAGAACAATCAATTGGAACAGCAGAACTAG 1485 0.5468 MECMDESTTTESLSITLSPTVSSQDKLLLPSSNNLSPPPPSTTLSRVGSGASAILDPDVAAGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGGAGEGDDEDGEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAAAAGTGNSIAGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGALKKVQERRCRGKLQKRIKFSPIENFTYTPNLSVGAPFQNRLVEASTKCTVQNQKKQIERQQTTSSRLPMVTTRSMDGNNTDPIEQLRQLQNQLEQQNNQLEQQN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00026 494 Coils Coil 473 494 - -
Vimu7g00026 494 SUPERFAMILY DNA-binding domain 74 130 IPR016177 GO:0003677
Vimu7g00026 494 MobiDBLite consensus disorder prediction 1 49 - -
Vimu7g00026 494 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Vimu7g00026 494 ProSiteProfiles AP2/ERF domain profile. 75 130 IPR001471 GO:0003700|GO:0006355
Vimu7g00026 494 Gene3D - 199 323 IPR015300 -
Vimu7g00026 494 MobiDBLite consensus disorder prediction 442 471 - -
Vimu7g00026 494 Pfam B3 DNA binding domain 208 313 IPR003340 GO:0003677
Vimu7g00026 494 Gene3D AP2/ERF domain 74 131 IPR036955 GO:0003700|GO:0006355
Vimu7g00026 494 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 70 357 IPR044800 GO:0003700
Vimu7g00026 494 FunFam AP2 domain-containing protein RAP2.8 74 131 - -
Vimu7g00026 494 SMART rav1_2 75 136 IPR001471 GO:0003700|GO:0006355
Vimu7g00026 494 MobiDBLite consensus disorder prediction 1 77 - -
Vimu7g00026 494 SMART B3_2 208 316 IPR003340 GO:0003677
Vimu7g00026 494 SUPERFAMILY DNA-binding pseudobarrel domain 206 311 IPR015300 -
Vimu7g00026 494 CDD B3_DNA 207 301 IPR003340 GO:0003677
Vimu7g00026 494 ProSiteProfiles B3 DNA-binding domain profile. 208 316 IPR003340 GO:0003677
Vimu7g00026 494 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00026 Vimu-Chr7 315041 317849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00026 3 391 B3 DNA Binding Superfamily AT1G25560 58.250 1.45e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vimu7g00026 B3 4.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00026 K09287 - gmx:100801107 606.675