Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00019 TTGGCTCCTATTGAAGCTCTAGAGTCATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAATAAACAAGGCATTATATCCCTTGATATCCTTTATTCTAAGGTGACCAGTGTAAAGTTTGTAGCTCAGGGTGAATCAATCTTAACTGGTTCAGCAGATAAGGTGGAACATTGGCTCTTTATTCTTTGTTCTATTGACATGCAAATATTAGAACCATTCCCAACCAGCATCGTGTCAGAAAATGATTCCATGAAGTGGTCTACCTCTTTATATTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATATGGTGGGGTACTTTAGTTCAAGAGTTCAGCGTCTCCTTCATCTTCACATTTCTATAGGACTACACAGATATGTATTGCGTTTGCGCCAGTGCTTTAAAAGTGATAGGCAAACCCTTACTCAAGAAGGAAGGATTCTAATCAAGTACATTGGGATGAATGCTATCGCATTTTTGGTTTCACTCCATCCTTTTCTATTTGGTGTGGGGAGAACTGTGACTTAG 531 0.3898 MAPIEALESYTQISSHPFHKTNKQGIISLDILYSKVTSVKFVAQGESILTGSADKVEHWLFILCSIDMQILEPFPTSIVSENDSMKWSTSLYFFSELMKEASDMVGYFSSRVQRLLHLHISIGLHRYVLRLRQCFKSDRQTLTQEGRILIKYIGMNAIAFLVSLHPFLFGVGRTVT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00019 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 91 160 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00019 Vimu-Chr7 191531 196717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00019 1 56 U-box Gene Family AT2G33340 40.909 8.09e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00019 K16275 - gmx:100781704 115.546