Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04568 TTGCTTCAAATTGTGATCTTAAAATCCAGTTTCCAAGGGAAGTGTGTTTGGAAGGTAATGAGGATGGAAGAAGAGAGACACGTCTCAGAATGTTCCAAGACAAGTCCTTCCAATGAAGAAGGTTGTGAAGAGAGTGAAGAGGAGAATGAAGATGAGAGTAAGCAGAACAACAATGGAGGAAGCTCAAGCAACAGTACTGTGGAAGAGAACGAGAAGAAAGCAACGGTGAGACCTTATGTTAGATCCAAGTTGCCTCGGCTACGTTGGACACCTGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTCGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATCAAAGGTTTGAGTATTGCTCATGTCAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTGGAGGCAAATCAAGGTAGAATAAGATATGGATATGGGGATGCTTCTCTTGCTATCTATGAAAACATGGTGAAAACTTGCATGAATAGAAGTTCAGTTGATGAATCTGGAGCTGAATTTTGTGGCAGCAGATTGACTGAGAGAACTAATGGAACCAATAGTAACATCATTTGGAATCATAATGTACTCCAAGCTGATTGTTCCGGTTTTAATGAATCCTTCTGCAGACCAATCAAAATGAACCAAGAAGATCCACATCAATCTACAGAAATGCAGCCAAGTGCACAAGAGCTCATGCCAAACAATGATATGCCTTCAAAAAATCTGGTGGAACTAAAGAGCTTAAAAAGGAAGGCTTCAGATTCTGACATTGATTTGAATCTGTCACTTAAATTAAGTTCAAGGGTCAGTGATGAGAATCATGGAAGCATGGTGGAGCATGAAATTGAGAGCAACCTATCACTGTCTTTGTGTTCTCAATCCTCCTCCTCTTATCTCAGCAGCAGGTTCAGAAAATCATCAAAAGATCATTCTAAGGAGCAAGGAGAAAGAGGCAGAACATTGGATCTCAGTATATGA 999 0.4064 MLQIVILKSSFQGKCVWKVMRMEEERHVSECSKTSPSNEEGCEESEEENEDESKQNNNGGSSSNSTVEENEKKATVRPYVRSKLPRLRWTPDLHLRFVHAVQRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEANQGRIRYGYGDASLAIYENMVKTCMNRSSVDESGAEFCGSRLTERTNGTNSNIIWNHNVLQADCSGFNESFCRPIKMNQEDPHQSTEMQPSAQELMPNNDMPSKNLVELKSLKRKASDSDIDLNLSLKLSSRVSDENHGSMVEHEIESNLSLSLCSQSSSSYLSSRFRKSSKDHSKEQGERGRTLDLSI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04568 332 Gene3D - 84 141 - -
Vimu6g04568 332 Pfam Myb-like DNA-binding domain 87 137 IPR001005 -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 308 332 - -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 26 77 - -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 26 40 - -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 223 243 - -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 223 246 - -
Vimu6g04568 332 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 140 IPR006447 GO:0003677
Vimu6g04568 332 MobiDBLite consensus disorder prediction 55 69 - -
Vimu6g04568 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 141 IPR017930 -
Vimu6g04568 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 61 230 IPR046955 GO:0003700
Vimu6g04568 332 FunFam Myb family transcription factor 83 141 - -
Vimu6g04568 332 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Vimu6g04568 332 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04568 Vimu-Chr6 51464438 51465988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04568 76 153 G2-like Transcription Factor Family AT2G42660 74.359 8.34e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g04568 Myb_DNA-binding 9.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04568 - - gmx:100802192 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04568 6 51464438 51465988 Vimu6g04568 6 51464438 51465988 ECH
Vimu6g04568 6 51464438 51465988 Vimu9g01010 9 17000570 17002436 PCT