Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04564 ATGACTACTCCTTTGGCTTACCAAGAACACCTTCCTGCAGCACCCGGATGGCTGAACAAAGGGGACAACGCTTGGCAGTTAACAGCAGCAACTCTTGTTGGTCTTCAAAGCATGCCTGGTCTTGTGATTCTCTATGCCAGCATAGTGAAGAAAAAGTGGGCTGTGAACTCGGCTTTCATGGCTCTCTATGCCTTTGCAGCAGTTCTCATTTGTTGGGTGCTTGTGTGTTACCGAATGGCCTTTGGGGAGGAACTTTTGCCCTTCTGGGGTAAGGGTGCCCCAGCACTGGGTCAAAATTTTCTCACAAAACGAGCCATAGTTATGGAAACCACCCACCGCTTTGATAATGGGACTGTTGAGACCCCTGCTGAAGAACCCTTTTATCCCATGGCTACACTTGTTTATTTCCAATTCACTTTTGCTGCTATTACTCTCATCTTGTTGGCTGGTTCTGTCCTTGGCCGAATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTTTGGTTAATCTTTTCTTACACTGTTGGGGCTTTCAGTCTCTGGGGTGGTGGCTTTCTCTACCAATGGGGTGTCATAGATTACTCTGGTGGCTATGTCATCCACCTTTCCTCTGGAATCTCCGGTTTAACTGCTGCTTATTGGGTTGGCCCAAGGTTGAAGAGTGACAGAGAGAGGTTTCCACCAAACAATGTGCTGCTGATGCTTGCAGGTGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGCGGAGCACCATATGCTGCAAATATTGCATCTTCAGTTGCTGTGCTGAACACAAACATTGCTGCAGCCACAAGTCTCCTTGTATGGACAACTTTGGATGTCATTGTCTTCGGGAAACCTTCTGTGATTGGAGCTGTGCAGGGCATGATGACTGGTCTTGCATGCATCACACCAGGAGCAGAGCAACTTGCAGGGCTTGTGCAATCGTGGGCTGCTATAGTGATGGGAATATCATCTGGGAGCATTCCATGGGTCACCATGATGATTTTGCATAAAAAGTCAACATTGTTGCAACAGGTGGATGACACCCTTGGTGTGTTTCACACGCATGCCGTGGCTGGGTTTTTGGGTGGTCTTCAAACAGGTCTATTTGCAGAACCAGCTCTGTGTAGGTTACTATTGCCGGTTACGAACTCAAGGGGTGCGTTCTATGGAGGAGAAGGTGGCATGCAATTCGTGAAGCAATTGGTGGCGGCGATGTTTGTGATTGCATGGAACTTGGTGTCGACCACCATCATTCTCCTTTTCATACAGCTGTTCATACCGTTGAGGATGCCGGACGAGCAGCTGGAGACCGGCGACGATGCCGTCCACGGGGAGGAAGCGTATGCCCTGTGGGGTGACGGAGAAAGATACGACCCAACCAGACATGGCTCCCTGCAGACTTCCAACACTGCTGTCTCACCTTATGTGAATGGTGCAAGAGGATTCACTATAGACCTGTAG 1473 0.4942 MTTPLAYQEHLPAAPGWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVCYRMAFGEELLPFWGKGAPALGQNFLTKRAIVMETTHRFDNGTVETPAEEPFYPMATLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGISGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSVAVLNTNIAAATSLLVWTTLDVIVFGKPSVIGAVQGMMTGLACITPGAEQLAGLVQSWAAIVMGISSGSIPWVTMMILHKKSTLLQQVDDTLGVFHTHAVAGFLGGLQTGLFAEPALCRLLLPVTNSRGAFYGGEGGMQFVKQLVAAMFVIAWNLVSTTIILLFIQLFIPLRMPDEQLETGDDAVHGEEAYALWGDGERYDPTRHGSLQTSNTAVSPYVNGARGFTIDL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04564 490 PANTHER AMMONIUM TRANSPORTER MEP2 10 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu6g04564 490 FunFam Ammonium transporter 6 455 - -
Vimu6g04564 490 NCBIfam ammonium transporter 22 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vimu6g04564 490 Gene3D Ammonium transporter AmtB like domains 4 455 IPR029020 -
Vimu6g04564 490 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vimu6g04564 490 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005886
Vimu6g04564 490 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005886
Vimu6g04564 490 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005886
Vimu6g04564 490 SUPERFAMILY Ammonium transporter 17 434 - -
Vimu6g04564 490 Pfam Ammonium Transporter Family 24 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04564 Vimu-Chr6 51427880 51431122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04564 130 490 Inorganic Solute Cotransporters AT2G38290 75.758 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04564 K03320 - gmx:100790119 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04564 6 51427880 51431122 Vimu6g04564 6 51427880 51431122 ECH