Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04562 ATGGAGTGCATCAACCCTACTTCTTGTGAAGGGTCATCCTCCAAGAACAAGAGCAAGGAGAAAAAGGGTGTGAAGAAAGGGAGCAAGGGAGGGGTGAAGCTTTCCACCGATCCACAAAGTGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTTAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACAGTCTCCATGTTGGAGGGAGCCATTCACTACGTCAAGTTCCTCAAAACCCAGATTTGGCTCCACCAAGCATTGATAAACTTTGTAGATTTTGATCATGATGAAGCTCCCGTGTACCTCCCCGCAGAGTATAATTTCCCTCATCAACATTCCTTCTCTCTTCAGCAAAACCATCCTTCAGTTTCGGTGCATTCTCATCAGCAGAGCCTACCACAGCCACCACTAGCACAGTGCTACTTCCAAGGTCAAGAAGACTTTGATGCCACTATCAAATATTGGCCTTCTTAG 492 0.4756 MECINPTSCEGSSSKNKSKEKKGVKKGSKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKTQIWLHQALINFVDFDHDEAPVYLPAEYNFPHQHSFSLQQNHPSVSVHSHQQSLPQPPLAQCYFQGQEDFDATIKYWPS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04562 163 SMART finulus 40 89 IPR011598 GO:0046983
Vimu6g04562 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 99 IPR036638 GO:0046983
Vimu6g04562 163 CDD bHLH_AtIND_like 35 94 - -
Vimu6g04562 163 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Vimu6g04562 163 FunFam Transcription factor LAX PANICLE 37 100 - -
Vimu6g04562 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Vimu6g04562 163 MobiDBLite consensus disorder prediction 1 46 - -
Vimu6g04562 163 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 152 IPR045843 GO:0003700|GO:0006355
Vimu6g04562 163 Gene3D - 35 91 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04562 Vimu-Chr6 51392073 51392899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04562 24 109 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.067 4.02e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g04562 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04562 - - gmx:113000114 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04562 6 51392073 51392899 Vimu6g04562 6 51392073 51392899 ECH
Vimu6g04562 6 51392073 51392899 Vimu9g00996 9 16720419 16721147 PCT