Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04541 ATGAGGACCCGTTTAGTCTCCACGAGGGTCATCATTATGGCCTCTCTTTGTTTCCTAGCAAGCATGAAATTGGAAGCCAAAACCGTCGACCCCTACAAGGTTCTTGGGGTCGATAAGAATGCAAGTCAGCGGGAAATTCAGAAGGCTTTCCACAAGTTATCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGAGTGCGCAAGAGAAGTTTGCTCAGATCAATAATGCGTATGACATTTTATCTGATGAAGAGAAGAGAAAGAACTATGACATGTATGGAGATGTAAATGGTAATCCTGGATTTCCTGGTGGCCATCCTGGATATCAAGGTGGCCATCCTGGATTTCAAGGTGGTCATCCCGGAGGTCGTGGTGGATATACTTACTTTACAGAGAGTGGTCCTGGGCAAAGCCATTTTAACTTCAAATCAGGGGGAGATTGGCAAGGAGGATCTAAGTCATTCTCCTTTTCCTCTGGTGGCTCGGGTGGTTCAAATTCTTTTGGGTTTGGCTTGGATGATATTTTTGGCAGTATTTTTGGTGGAGGTGCTGGGAGTCAGTTTGGTGGTTTTGGCAGTTCAGCTAATACTGAAGGGACGTCCACAGCTTCTCCCCAACGTCTCACATCTATAAATTCACGTATCTACAAGAAAGAGATAGAAAATGCAGGGATGACTTGGATTTTGTTGTCTTATAGACCTAAAAGTGCATCGAAGAATATCCAATACTTTGAATCCACTGTAGAGGAGGTTGCCAGTACATTACAGGGAGCTGTGAAGGTTGGAAGCATTAACTGTGATAAGGAAGTCTCGTTGTGTAAAGAGCTTGGCATGTATTCACAAAATGCTCCTAGAATTTTTGTTTTGTCTTACAAGGAGAATGAAATAGGTTCTTTGGTGGAGTATAGTGGACACTTGGCTGCTAAGAATTTGAAGGCTTTCGTTCAAGAACACTTGCCAAGGTTTTCCAAGCGAACCAACTTGAATAATCTGGACCAATTTAGCACTACGGCAAAGTTGCCTAGGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCAGTAATTTGGCGTGTTCTTAGTGGCTTGTTTCACAAACGCATTATTTTCAGTGATGCACAGGTAGACGATGTTTCTGATCTAAGAATAAAAAGTCTAGGAGTTGATGCACTTCCATCAATTGTTGGTTGGCTACCTAATGGAGAAAAACGTGTTCTGAAAACTGGGATTTCTGTAAAAGATTTAAAATCTGCAGTTCTCGATCTTAGTAAAATTCTTGATAGTTTTGTAGAGGCAAGTAAAAAGGAAGCATCAGCTCAGGCCAAGAAGGCACAAACTGATCCAGACGACGGACGCGTACCATTGCTTTCTCAATCCAACTTTGAGGCTCTCTGTGGTGCTAAAGCTCCTGTCTGCATAATTGGCGCCTTCAGATCTTCTAAAGCCAGAGAAAAGCTAGAATCAATCCTCACTTTGGTCTCTCAAAAATCTTTGTCAAGAAGACCAAATGGTGGGAGCAGCAGCTCTAGGGATTCCATTTCTTATGCTCTATTAGATGCTGCAAAGCATCAGTCATTTCTAAAGGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTGTTGATTGCTTACAAACCTCGTAGAGGAAAGTACAGTGTATATAGGGATGAAATGACAATAGAGGAGGTGGAGAATTTCGTTGCCTCCGTTCTCAGTGGAGATATACCCTTCAGAGAAACGAGTGGGAAGGCTGTACTATAG 1761 0.4259 MRTRLVSTRVIIMASLCFLASMKLEAKTVDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKSAQEKFAQINNAYDILSDEEKRKNYDMYGDVNGNPGFPGGHPGYQGGHPGFQGGHPGGRGGYTYFTESGPGQSHFNFKSGGDWQGGSKSFSFSSGGSGGSNSFGFGLDDIFGSIFGGGAGSQFGGFGSSANTEGTSTASPQRLTSINSRIYKKEIENAGMTWILLSYRPKSASKNIQYFESTVEEVASTLQGAVKVGSINCDKEVSLCKELGMYSQNAPRIFVLSYKENEIGSLVEYSGHLAAKNLKAFVQEHLPRFSKRTNLNNLDQFSTTAKLPRVLLLSTKKDTPVIWRVLSGLFHKRIIFSDAQVDDVSDLRIKSLGVDALPSIVGWLPNGEKRVLKTGISVKDLKSAVLDLSKILDSFVEASKKEASAQAKKAQTDPDDGRVPLLSQSNFEALCGAKAPVCIIGAFRSSKAREKLESILTLVSQKSLSRRPNGGSSSSRDSISYALLDAAKHQSFLKAFDKTGYKSSDKLLIAYKPRRGKYSVYRDEMTIEEVENFVASVLSGDIPFRETSGKAVL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04541 586 PANTHER DNAJ PROTEIN ERDJ3A 1 585 - -
Vimu6g04541 586 SUPERFAMILY Chaperone J-domain 26 128 IPR036869 -
Vimu6g04541 586 Pfam DnaJ domain 30 91 IPR001623 -
Vimu6g04541 586 ProSiteProfiles dnaJ domain profile. 30 94 IPR001623 -
Vimu6g04541 586 SUPERFAMILY Thioredoxin-like 450 576 IPR036249 -
Vimu6g04541 586 Coils Coil 64 84 - -
Vimu6g04541 586 PRINTS DnaJ domain signature 32 50 IPR001623 -
Vimu6g04541 586 PRINTS DnaJ domain signature 50 65 IPR001623 -
Vimu6g04541 586 PRINTS DnaJ domain signature 66 86 IPR001623 -
Vimu6g04541 586 PRINTS DnaJ domain signature 86 105 IPR001623 -
Vimu6g04541 586 Gene3D DnaJ domain 19 100 IPR036869 -
Vimu6g04541 586 MobiDBLite consensus disorder prediction 101 130 - -
Vimu6g04541 586 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Vimu6g04541 586 Gene3D Glutaredoxin 209 320 - -
Vimu6g04541 586 SUPERFAMILY Thioredoxin-like 206 320 IPR036249 -
Vimu6g04541 586 CDD DnaJ 30 83 IPR001623 -
Vimu6g04541 586 SMART dnaj_3 29 86 IPR001623 -
Vimu6g04541 586 Gene3D Glutaredoxin 452 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04541 Vimu-Chr6 51244833 51248308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04541 32 93 C2H2 Transcription Factor Family AT1G74250 39.706 8.27e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04541 - - gmx:100796871 789.26