Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04535 GTATCTTCGAGAGGTGGGGCGGCGTCGGTGGTCACGACTGCGACTGCGGCGGGCAACAAATCCCTTTTAAAGGAGCCTCGGTACCAGGGCGTGAGAAAGAGACCGTGGGGGAGGTTCACAGGAGATATCAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTGTGCCGAGGAAGCTACTCGAGCCTATGATGCCGCCACACGGACTCTTCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGTCCTTCGACGATGCCATTGCTGATGACGATCTTCGTTGCATCGCGCTCTGCCTTTGAACACTACCGTTGA 339 0.5546 VSSRGGAASVVTTATAAGNKSLLKEPRYQGVRKRPWGRFTGDIRDPLKKARVWLGTFDCAEEATRAYDAATRTLRGPKAKTNFPLSHPFCPSTMPLLMTIFVASRSAFEHYR 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04535 112 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 86 - -
Vimu6g04535 112 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 FunFam Ethylene-responsive transcription factor 2 27 85 - -
Vimu6g04535 112 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Vimu6g04535 112 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Vimu6g04535 112 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04535 Vimu-Chr6 51163386 51163724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04535 4 106 AP2-EREBP Transcription Factor Family AT3G20310 55.340 1.99e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g04535 AP2 5.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04535 K09286 - gmx:100803943 132.494