Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04516 ATGACATCCACAGTCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGTTAGGAGTGAAATCGGACATATACTCCCTTGGGATAATCTTTTTACAAATTTTGACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGCAAGGGCCATTGAGAAGGGAACTTTATCTGAGATATTGGATCCATCACTCTTTGATTGGCCACAAGAGGAGGCCTTGATGTTTCCTAAGTTGGGAGTGCAGTATGCTGAATTAAGATGCAGAGACAAACCTGATCTTGGCAAGGTTGTCCTACCAGAACTCAACAGACTCAGAAACCTTGTTGAAGATACTGACCTTATTTCATTTTTTGATCATACAAGGGAAATTAGAGCTAATAATTCAGTGGCTTTCTGA 405 0.4123 MTSTVGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVARAIEKGTLSEILDPSLFDWPQEEALMFPKLGVQYAELRCRDKPDLGKVVLPELNRLRNLVEDTDLISFFDHTREIRANNSVAF 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04516 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04516 134 SUPERFAMILY Protein kinase-like (PK-like) 1 79 IPR011009 -
Vimu6g04516 134 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Vimu6g04516 134 PANTHER OS02G0152300 PROTEIN 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04516 Vimu-Chr6 50957204 50957812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04516 1 115 Receptor kinase-like Gene Family AT5G12000 68.696 1.97e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu6g04516 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04516 - - gmx:100803867 205.682