Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04498 ATGGAGGGTCGTCATCTCCATCACCATCACCATCACCGGCAGGAGCAGCAGCAACAACAACATCATCAGCATCACCATCACCACTCTCACAACATCACAACCAGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTCATCTCCAACCGGATGAAGGAAAAGGGTTTCCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGGTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCGCATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGCTTTCATCAGAGGATGAGGAAGAGGGAAACGAAGAGAGTGAGGGAGATCAGAAGGGTAGCGTGATGAAAAAGAAGAAGAAGGGGAAGATGGTAATAGGAGGAGGAGGAAAGAGTGGTAGCAGTAGCAATATGGAGAGTTTGAAGGAGATAATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAACGAGAGGAGGATGAAAGAGATGGAATGGAGGCAAACCATGGAGGCATTGGAGAATGAGAGAATGATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAACTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCACTTCTCAACAAGCTCACAAGAGAACAGATGTAG 867 0.489 MEGRHLHHHHHHRQEQQQQQHHQHHHHHSHNITTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFHRSAEQCKCKWKNLVTRYKGCEAIEPEAMRQQFPFYNELQGIFASRMQRMLWAEAEGGSKKKVVQLSSEDEEEGNEESEGDQKGSVMKKKKKGKMVIGGGGKSGSSSNMESLKEIMEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRQTMEALENERMMMDQRWREREEQRRIREELRADKRDALITALLNKLTREQM 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04498 288 MobiDBLite consensus disorder prediction 150 196 - -
Vimu6g04498 288 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g04498 288 MobiDBLite consensus disorder prediction 1 31 - -
Vimu6g04498 288 Gene3D - 47 108 - -
Vimu6g04498 288 CDD GT1 45 110 - -
Vimu6g04498 288 Coils Coil 197 217 - -
Vimu6g04498 288 Pfam Myb/SANT-like DNA-binding domain 46 128 IPR044822 -
Vimu6g04498 288 ProSiteProfiles Myb-like domain profile. 47 103 IPR001005 -
Vimu6g04498 288 PANTHER FI21293P1 12 284 - -
Vimu6g04498 288 FunFam Zinc finger and SCAN domain-containing 20 47 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04498 Vimu-Chr6 50768841 50770224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04498 24 286 Trihelix Transcription Factor Family AT2G38250 52.347 3.32e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu6g04498 Myb_DNA-bind_4 2.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04498 - - gmx:100794230 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04498 6 50768841 50770224 Vimu6g04498 6 50768841 50770224 ECH