Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04496 ATGGCGAAAACCCGAGGTTCCTGGCTCCTAAAAAACCGCATCCCCAGCCGTTACCGTACACCCTCTCACACACCCACCTTCACCTCACTCGCTACTCACTCACACTCATTCTCACTCTCTTACTCATCTTCTTCATCGTCTTCCACGTCTCGTCCACCATCTCCTCCCAAACCCTCCCCTCCGCCGCGATCTCCGCTCCTCCTACCATGGGAAACTGCTGCAGATCCCCGGCCGCCCTTCTCCAACGCAGACCACCATGGCAAGCGCGGTTCCGGGGCTGAGGCTGTCAAACAGAAGGCGCCGATCACGGTCCTTGCTGGCGTGCCCAAGGAAAACATCGAGGACCGCTACCTCGTGGACCGCGAGCTCGGCCGCGGCGAGTTCGGCGTGACTTACCTCTGCATCGACCGTGACACGCGCGAGCTGCTCGCGTGCAAAAGCATCTCCAAGCGGAAGCTCAGGACGGCCGTCGACGTCGAGGACGTCCGCCGCGAGGTCGCCATCATGCGCCACCTTCCGGAGAGCCCCAGCATCGTGTCACTCCGCGAAGCCTGTGAGGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGGGGTGAGCTCTTCGACCGGATCGTCGCCCGCGGCCACTACACCGAGCGAGCTGCTGCCGCTGTCACTAGGACGATTGTGGAGGTTGTGCAGCTCTGCCACAAGCACGGGGTCATCCACCGCGACCTGAAACCGGAGAATTTCTTGTTTGCAAACAAGAAGGAGAATTCGCCGCTCAAGGCTATTGACTTCGGGCTTTCCATATTCTTCAAGCCAGGTATGGTTGAGTTTGTACTTGATTGGTGGGGTTATTGTTTGGAAGACTATGTTGGAGTTTCAGATGCCTGTGATGTGGTCAATCTGTTCTCTGATGTTGAAATTGTGGAGTCGGTTGCGGTAATGATAGATCAGCTAGCGCTAAGCTTGGCAGTTGCTTTGCTTGTGTTGGATTAG 990 0.5747 MAKTRGSWLLKNRIPSRYRTPSHTPTFTSLATHSHSFSLSYSSSSSSSTSRPPSPPKPSPPPRSPLLLPWETAADPRPPFSNADHHGKRGSGAEAVKQKAPITVLAGVPKENIEDRYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDVEDVRREVAIMRHLPESPSIVSLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGMVEFVLDWWGYCLEDYVGVSDACDVVNLFSDVEIVESVAVMIDQLALSLAVALLVLD 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04496 329 SMART serkin_6 117 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04496 329 ProSiteProfiles Protein kinase domain profile. 117 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04496 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vimu6g04496 329 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vimu6g04496 329 Pfam Protein kinase domain 119 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04496 329 MobiDBLite consensus disorder prediction 1 96 - -
Vimu6g04496 329 MobiDBLite consensus disorder prediction 51 67 - -
Vimu6g04496 329 Gene3D Transferase(Phosphotransferase) domain 1 203 281 - -
Vimu6g04496 329 MobiDBLite consensus disorder prediction 17 50 - -
Vimu6g04496 329 SUPERFAMILY Protein kinase-like (PK-like) 115 273 IPR011009 -
Vimu6g04496 329 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 285 - -
Vimu6g04496 329 FunFam Calcium-dependent protein kinase 1 119 202 - -
Vimu6g04496 329 Gene3D Phosphorylase Kinase; domain 1 118 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04496 Vimu-Chr6 50707796 50709450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04496 63 272 EF-hand Containing Proteins AT3G51850 79.524 8.04e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu6g04496 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04496 K13412 - gmx:100783922 370.933