Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04492 ATGGGTTCCTCTCGCTCACGTGCCTCTGCCACCGCCAAAGAACGCCTACGTTGGACACAAGAACTCCATGATCGCTTTGTGGTGGCTGTAAATAGACTAGGTGGCCCTGATCGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGACTATGGGTATTTCAGAGCTAAGCATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCTCCACAAGAGGAAAACTTGAGAAGAAAAGCATATCAGATGTACTTCCAAATTTTAGCTCTATATCTGCTCTTCAACTAAAGGAACTGCTTCAAATACAAAAAGAGGTGCAAAATCGCTTGGCTGATAAAACACAGGTTCAGAGAAGTATGAAGGAAAAAGTTGAAGCACAAGGAAGGTACATGGAGAGACTTGGACAAAGCAGTGAGATGAAAACAATAACTGGAAAAGCATGCAAGCCTTTTGCTTCTTCTGCAACTGCATCTCTGCCTTCTCTTTCTGAGGAATCCGAATCACTGAAATCACAAAGTGAGAAAGAGGACGAATCAGTCAAAAAGCATAGGATTTCAGAAGAGGGTGTTTTTCCATTAAGTTTTGAACATGCATCATCCACCCCACCAGAATTCTACAACCAAACATGGAATCTTCCTTGGAGCCAGCTTGCAGCAGCATGCCTATCAACTTTGGATCCCAGTTTCATATTTTGA 717 0.4226 MGSSRSRASATAKERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKTMGISELSIYHVKSHLQKYRISKLIPESSTRGKLEKKSISDVLPNFSSISALQLKELLQIQKEVQNRLADKTQVQRSMKEKVEAQGRYMERLGQSSEMKTITGKACKPFASSATASLPSLSEESESLKSQSEKEDESVKKHRISEEGVFPLSFEHASSTPPEFYNQTWNLPWSQLAAACLSTLDPSFIF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04492 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 184 IPR044848 GO:0003700
Vimu6g04492 238 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Vimu6g04492 238 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Vimu6g04492 238 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Vimu6g04492 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Vimu6g04492 238 Gene3D - 12 73 - -
Vimu6g04492 238 MobiDBLite consensus disorder prediction 165 190 - -
Vimu6g04492 238 Pfam MYB-CC type transfactor, LHEQLE motif 102 141 IPR025756 -
Vimu6g04492 238 MobiDBLite consensus disorder prediction 175 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04492 Vimu-Chr6 50610070 50616982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04492 3 141 G2-like Transcription Factor Family AT4G28610 45.517 1.50e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g04492 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04492 - - aip:107639556 270.396