Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04491 TCTGATAAGGATAACTTGTGCCTCTATGGACACCCAAATGAAGCCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCGGCTCTTGGAATCAATTTTGCTAGGGATGGCATGAACCGGAGGGACTGGCTATCTCTGGTTGCTGTGCACAGTGACTCGTGGTTGGTTTCTGTGGCCTTCTACCTTGGGGCTCGTCTTAACCGCAATGAAAGTGTATGCAAAACCATGCGAGGCATGCTGCATGTTCCATTTCTGATGTCATTCCTGCACATTTATATGCAGAGATCCAATGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCTGCGGATGAGGGTTACGAGGAGGATGAAGATGAGCACAATGAAGCACTCTGTGGAAGCTGTGGTGGAAACTACAACTCGGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCTGCAAAGGCTGAGGGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAA 552 0.4982 SDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNESVCKTMRGMLHVPFLMSFLHIYMQRSNDGQVKSNPKFAADEGYEEDEDEHNEALCGSCGGNYNSDEFWICCDICERWFHGKCVKITPAKAEGIKQYKCPSCSLRRGRP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04491 183 ProSiteProfiles Zinc finger PHD-type profile. 127 179 IPR019787 -
Vimu6g04491 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 177 IPR013083 -
Vimu6g04491 183 Pfam Alfin 2 75 IPR021998 GO:0006355|GO:0042393
Vimu6g04491 183 ProSitePatterns Zinc finger PHD-type signature. 130 176 IPR019786 -
Vimu6g04491 183 SMART PHD_3 129 177 IPR001965 -
Vimu6g04491 183 SUPERFAMILY FYVE/PHD zinc finger 118 181 IPR011011 -
Vimu6g04491 183 Pfam PHD-finger 130 177 IPR019787 -
Vimu6g04491 183 CDD PHD_AL_plant 129 179 IPR044104 -
Vimu6g04491 183 FunFam PHD finger alfin-like protein 122 178 - -
Vimu6g04491 183 PANTHER CPG BINDING PROTEIN 2 182 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04491 Vimu-Chr6 50606551 50608607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04491 4 182 Alfin-like Transcription Factor Family AT5G05610 62.437 3.49e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu6g04491 Alfin 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04491 K26274 - vvi:100259069 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04491 6 50606551 50608607 Vimu9g00778 9 12158667 12160639 PCT