Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04487 ATGATTCTGACTGCAAAACTCTTTCTCACTCCTTTCTTATGTCTTCGACAGGAATGGAAACTTTATCTAAACAGAGGGAGTGCAATAAATATTTCGTATCACGTTAGTTCTACGAGCTCTTCTGTTTTCCTTATAGTTGCGCAGGGGACGGAGACCTTCACTCGGTGGCTGGAGAACCCAACAGAACCTAACACAACTTTGTCATGGAATGTGATTCATGGAAGTGGTATGATTACCCAGGAAATATTCCAATCGTCGAGCTATTACGTAGCATTGGGTAATTTGGATGAGGATGTGAAGGTGACATTAAACCTCAGTGTAATATCCTCTTTGCATAATACAACAAATGCTTACTACAGATGTGCTCTTATCAACACTCCATGCGCTTTAGATATTTTCTTTCTTGATGGAAGTGCAGCTGTTTTAGTTACTCCTGCTCCACAACAGGCAAGATTATTATCATTTACTTACTTCAAAAAAATGCTTATCAATGCATCCAATGAATGGTATTTCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGGGGATTGACTATGCTTGTGTTTTGGTCCTTCAACTTATTGAACAACCTTCAGTCTGCTCATGAAGGTGGAGCAGGACATAGAAGTGGGGGAACAGAACCTCAGAGAGCACCTCTGCTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGCCACAAGACGAGGAAGATCTTGACTTTCTTCCAGGAGGCCCCATTGATGGGAAGCTTTCTGGTGATGGTCAAACCAGTAACAATACACGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTTCTTCCGTGTGGCCACTGTGTGGCTTGTTTTGCTTGTGGAACCAGGATAGCTGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCACGGTTTGA 984 0.4228 MILTAKLFLTPFLCLRQEWKLYLNRGSAINISYHVSSTSSSVFLIVAQGTETFTRWLENPTEPNTTLSWNVIHGSGMITQEIFQSSSYYVALGNLDEDVKVTLNLSVISSLHNTTNAYYRCALINTPCALDIFFLDGSAAVLVTPAPQQARLLSFTYFKKMLINASNEWYFKLSYGPRWVTYIFGIGGLTMLVFWSFNLLNNLQSAHEGGAGHRSGGTEPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLPGGPIDGKLSGDGQTSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFTV 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04487 327 SUPERFAMILY RING/U-box 275 321 - -
Vimu6g04487 327 Pfam Domain of unknown function (DUF4792) 16 53 IPR032008 -
Vimu6g04487 327 Pfam Zinc finger, C3HC4 type (RING finger) 273 321 - -
Vimu6g04487 327 SMART ring_2 276 314 IPR001841 -
Vimu6g04487 327 FunFam E3 ubiquitin-protein ligase APD2 265 326 - -
Vimu6g04487 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 327 IPR013083 -
Vimu6g04487 327 PANTHER OS05G0521000 PROTEIN 16 327 - -
Vimu6g04487 327 Pfam Domain of unknown function (DUF4793) 77 194 IPR032010 -
Vimu6g04487 327 ProSiteProfiles Zinc finger RING-type profile. 276 315 IPR001841 -
Vimu6g04487 327 MobiDBLite consensus disorder prediction 210 238 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04487 249 324 C3H Transcription Factor Family AT3G06140 30.263 3.63e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04487 - - ccaj:109792628 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04487 6 50565955 50573548 Vimu6g04487 6 50565955 50573548 ECH