Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04467 ATGGGTTCTCACCAACACGAACCATGGCTACTGGAGAACGGAAACCCGAAGGTGTTGACAAGGGAAATGAGACATGGTCGCACTGCGCACAGCAAGTCTTCCAACTCACTTCGCAAGAAGTCTGATCGCACTCTTGTTTCTAAGGTTCCCTGTGCCACTATCCGAAACGTGCTTTTCAACTTGCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATTCCTGCTATTCCTGTTGCCATTGTTGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTTTTCGTGTTGAGCTTGCTTGGACTTACCCCACTTGCTGAACGTGTGAGCTTCATCACTGAACAAGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAACGCGACGTGTGGGAATGTTACGGAGCTCATAATAGCAATATTTGCGCTTAGCAGTAACAAGATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGCACCTCTCTATTATGTGGTGGCATTGCAAACGTTGGATTGGAACAAAAATATGATAGAAGACAAGGAGATGTGAACTCACTTATGCTGCTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTTAAATATAGCGCTGCCTCAGCTGCTCTCACCGTTGATCCTTCACTCCACTTGTCTAGAGCTTCTAGCATTGTGATGCTGATTGCATATGTTGTTTACATAATCTTTCAACTGTGGACACACAGGCAGCTATTTGAAGCTGAAGATGAGGATGAAGATGACAACAATGGTTCAGATGAACAAGCCGTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTGTTCATTGCTCTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTGTGTGTGATCGTTGCTTGGACAATGGGTGTCAAAATGGATTTGAACTTCAACATCCTTGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTACAAAGAACACCATTGAACCAAGCTGATGTTACAAACGTCATTCCTAATGGAGTTTTAAGTGCTTAG 1335 0.4449 MGSHQHEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRKKSDRTLVSKVPCATIRNVLFNLQEVILGTKLSILIPAIPVAIVAEYCGFGRPWVFVLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANVGLEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRQLFEAEDEDEDDNNGSDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWTMGVKMDLNFNILETGSVALAIIVTSFTLQDGTSHYMKGLVLLLCYIVIGACFFVQRTPLNQADVTNVIPNGVLSA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04467 444 Gene3D - 272 422 IPR044880 -
Vimu6g04467 444 Gene3D - 121 271 IPR044880 -
Vimu6g04467 444 NCBIfam calcium/proton exchanger 73 422 IPR004798 GO:0006816|GO:0015369
Vimu6g04467 444 FunFam Vacuolar cation/proton exchanger 267 423 - -
Vimu6g04467 444 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Vimu6g04467 444 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016020|GO:0055085
Vimu6g04467 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 426 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vimu6g04467 444 NCBIfam calcium/proton exchanger 56 422 - -
Vimu6g04467 444 FunFam Vacuolar cation/proton exchanger 121 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04467 Vimu-Chr6 50197360 50200116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04467 7 430 Antiporters AT2G38170 69.515 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04467 K07300 - gmx:100779440 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04467 6 50197360 50200116 Vimu6g04467 6 50197360 50200116 ECH
Vimu6g04467 6 50197360 50200116 Vimu9g00798 9 12432611 12436953 PCT