Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04460 ATGATTAGTTTGGTACGAGGAACGGGTAAAACGAGTTCATCAATGGGGTTTGGTCTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAGGAAGAAGGAAGGATGGGCAAGTCTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGAGTATTCAAGTGGAGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTTGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATATAAGAAAAGTGCTTCACTATCCAAATGTGATTACTTCTACACCCTGACTATAATAACAGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGAAGACCGAAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGTTTTCTGAAACTGACATTGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGGAATGCTACCAAGACTGGCATGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATCAATGACTTGGCTTCAATCAACAAGGAGAATTTGAAAAGATTGTTCATGTACATAGAAAGTTTGCCTCTAATTGCCAGATCCTACATTCACCATCTCATATCATCACCTCTAGTGATTGCCAATTAG 819 0.4054 MISLVRGTGKTSSSMGFGLKRRKKRGEAEEEGRMGKSFKDSLKALEADIQFANTLASEYSSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKKSASLSKCDYFYTLTIITGVVFPSLLQLHRGITDVEDRKQKHLCATKYKLKDLTSKGKFSETDIEREEECGICLEMNSMVVLPNCYHSMCMECYQDWHARSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENLKRLFMYIESLPLIARSYIHHLISSPLVIAN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04460 272 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Vimu6g04460 272 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g04460 272 Pfam Zinc finger, C3HC4 type (RING finger) 170 216 - -
Vimu6g04460 272 SUPERFAMILY RING/U-box 162 216 - -
Vimu6g04460 272 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Vimu6g04460 272 SMART ring_2 173 210 IPR001841 -
Vimu6g04460 272 PANTHER RING FINGER PROTEIN 41, 151 36 257 - -
Vimu6g04460 272 FunFam RING/U-box superfamily protein 154 220 - -
Vimu6g04460 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 221 IPR013083 -
Vimu6g04460 272 MobiDBLite consensus disorder prediction 1 35 - -
Vimu6g04460 272 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04460 Vimu-Chr6 50067442 50070443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04460 113 218 C3H Transcription Factor Family AT5G01960 27.928 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04460 K25840 - gmx:100814293 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04460 6 50067442 50070443 Vimu6g04460 6 50067442 50070443 ECH