Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g04459 | ATGGGGTCAAGCAGTTTTCTATGGAACTGTACTAAAAAATTTGTCACAGCTGCTGTCATCACTGTGACTGTGTCTGATCGTTTTGGGACAGTTGTTCCTGTTCGAGGTGGCTCTATGTCTCCCACATTAAATCCTAGAACTGGTTCTCGGATGGAAGATGTTTTTGATGACTATGTTTTTGTTGAGAAATTTTGCCTTTTGGGGTACGAATTTTCAAATGGCGATGTGGTGGTCTTCCGCTCCCCAACGAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTACCTGGTGAATGGTATGGCACTCATCATAACAACGATGTGATTCGGATCCCAATGGGACATTGTTGGGTTGAGGGAGACAACTCAGCGTCTAGCATTGATTCAAAGTCATTTGGACCGATTCCTTTGGCCCTAATTCGGGGAAGGGTTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGAGTACTCCACCACAAAGATTATCTTCTATATCGGAATAA | 516 | 0.436 | MGSSSFLWNCTKKFVTAAVITVTVSDRFGTVVPVRGGSMSPTLNPRTGSRMEDVFDDYVFVEKFCLLGYEFSNGDVVVFRSPTNHKETHIKRIAALPGEWYGTHHNNDVIRIPMGHCWVEGDNSASSIDSKSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSSISE | 171 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g04459 | 171 | CDD | S26_SPase_I | 31 | 145 | IPR019533 | GO:0004252|GO:0006465 | |
Vimu6g04459 | 171 | FunFam | Mitochondrial inner membrane protease subunit | 25 | 163 | - | - | |
Vimu6g04459 | 171 | PANTHER | MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 | 1 | 164 | IPR037730 | GO:0006465|GO:0006627|GO:0008236|GO:0042720 | |
Vimu6g04459 | 171 | Gene3D | Umud Fragment, subunit A | 27 | 163 | - | - | |
Vimu6g04459 | 171 | Pfam | Signal peptidase, peptidase S26 | 9 | 99 | IPR019533 | GO:0004252|GO:0006465 | |
Vimu6g04459 | 171 | Pfam | Signal peptidase, peptidase S26 | 107 | 150 | IPR019533 | GO:0004252|GO:0006465 | |
Vimu6g04459 | 171 | SUPERFAMILY | LexA/Signal peptidase | 30 | 158 | IPR036286 | - | |
Vimu6g04459 | 171 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 112 | 131 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
Vimu6g04459 | 171 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 27 | 43 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
Vimu6g04459 | 171 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 89 | 101 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g04459 | Vimu-Chr6 | 50063015 | 50064707 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g04459 | 39 | 162 | MADS-box Gene Family | AT1G29960 | 34.615 | 3.64e-18 | 74.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g04459 | K09648 | - | gmx:100527429 | 310.842 |