Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04451 ATGCTGTTTAATGGGAGCCTAGGAGACTGGAGCTGGGGCATAGCCATGTTTTGTAATTGTTTTGGTGCTTTGAATTGCTTTGGAAGGAGGGATGATCCTGCGGACCAGCCACAAGAACAAGCTGTTGCAACTAAAAAGTTTAGCTATAACTCATTGAGATCAGCAACAAACGATTTTCACCCATCGAGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCCACAAGGGAGTTTTAAGGGATGGTACTCGGGTTGCTATCAAGTCTCTTTCTGTTGAGTCTAAACAAGGGGTTCATGAATTTATGACAGAAATTGATTTGATATCAAATATACGACATCCAAATCTTGTGGAACTGATTGGCTGCTGTATTGAGGGTAGTAATCGAATACTGGTTTATGAGTTTATGGAGAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCAAAAAGTAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGTCGTGGCACAGCTTCTGGTCTACGTTTTCTTCACGAAGAGGCTCAACCAAACATTGTTCATAGGGATATCAAGGCCAGTAACATATTGTTGGATGGGAATTTTAATCCGAAAATTGGGGACTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACACATGTTAGTACTCGAGTTGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTGGGACAACTTACAAAGAAGGCAGACGTTTACAGTTTTGGGATTCTCATGCTTGAAGTAATCAGTGGGAAAAGTAGTAGCATATCTGCATTTGATGAGGACTATTTGGTTTTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAATAGGCTTCTAGACCTTGTTGATTCAGAACTAAGTGAGTATGATGAGAGTGAGGTGTATCGGTTCCTTGTGGTGGCTCTATTTTGCACCCAATCAGCTGCTCAGCATAGACCAAGCATGAAACAAGTATTGGAAATGCTTTCCAAAGAAGTTCATCTTAATGAGAAGGCTTTGACTGAGCCTGGAATATACAGATGGCACAGCACTGGAAAAAGGGGTGGTTCTTTGAATGAAACATCATCTCAGGCAATCAAGCCCAGAAAAACTGGAAATCCACATGAAGCAGCTTCAGCTCACTTCAGTGGTACAGATATTGTGACAGAGATGCTTCCACGATGA 1185 0.4194 MLFNGSLGDWSWGIAMFCNCFGALNCFGRRDDPADQPQEQAVATKKFSYNSLRSATNDFHPSSKIGGGGYGVVHKGVLRDGTRVAIKSLSVESKQGVHEFMTEIDLISNIRHPNLVELIGCCIEGSNRILVYEFMENNSLASSLLGSKSKYVALDWPKRAAICRGTASGLRFLHEEAQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEVISGKSSSISAFDEDYLVLVEWAWKLKEENRLLDLVDSELSEYDESEVYRFLVVALFCTQSAAQHRPSMKQVLEMLSKEVHLNEKALTEPGIYRWHSTGKRGGSLNETSSQAIKPRKTGNPHEAASAHFSGTDIVTEMLPR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04451 394 Gene3D Phosphorylase Kinase; domain 1 28 134 - -
Vimu6g04451 394 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Vimu6g04451 394 FunFam cold-responsive protein kinase 1 30 134 - -
Vimu6g04451 394 Pfam Protein tyrosine and serine/threonine kinase 62 329 IPR001245 GO:0004672|GO:0006468
Vimu6g04451 394 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 44 358 - -
Vimu6g04451 394 CDD STKc_IRAK 65 331 - -
Vimu6g04451 394 SMART serkin_6 59 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04451 394 MobiDBLite consensus disorder prediction 351 380 - -
Vimu6g04451 394 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Vimu6g04451 394 MobiDBLite consensus disorder prediction 354 369 - -
Vimu6g04451 394 ProSiteProfiles Protein kinase domain profile. 59 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04451 394 Gene3D Transferase(Phosphotransferase) domain 1 135 343 - -
Vimu6g04451 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vimu6g04451 394 FunFam Putative LRR receptor-like serine/threonine-protein kinase 135 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04451 Vimu-Chr6 49977261 49982481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04451 29 344 Receptor kinase-like Gene Family AT1G56120 51.097 1.06e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu6g04451 PK_Tyr_Ser-Thr 7.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04451 - - gmx:100816683 677.937