Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04431 ATGGAGGGGAGAGATGAGGATGTGAGGGTAGGAGCCAACAGGTATGGAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGACAAAGACTACAGAGAGGATCCTCCAGCTCCATTGTTTGAGCCTAGAGAGTTAACATCATGGTCTTTCTATAGAGCAGGGATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTGGCAAAATCTCCCAACAAATGCTCCACAGTTGGTGTCCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTACTGTACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGTTGTTCTTGGCACGCAAGTTATCTCTCACTAGGACAGTGTTCTACATGATCATGCAGTGCTTAGGAGCTATCTGTGGTGCTGCTGTGGTCAAGGGATTCCAATCAAACCAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTGAGTAAAGGATACTCCAAAGGTGATGGTCTTGGAGCAGAAATTGTAGGCACTTTTATTCTGGTTTACACTGTTTTCTCAGCCACAGATGCCAAACGAAATGCTAGAGACTCGCATATTCCTATTTTAGCACCTTTGCCTATTGGTTTTGCCGTCTTTCTGGTGCACTTGGCTACAATTCCTATCACAGGGACTGGCATCAACCCTGCTAGAAGTTTAGGTGCAGCTCTTATATACAACAAGGACCAAGCTTGGGATAACCATTGGATCTTCTGGGTTGGGCCTTTTGTTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGGGCCATTCCTTTTAAATCAAAATGA 864 0.4583 MEGRDEDVRVGANRYGERQPIGTGAQTQDDKDYREDPPAPLFEPRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSPNKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYMIMQCLGAICGAAVVKGFQSNQYERLGGGANTLSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHIPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDNHWIFWVGPFVGAALAALYHQIVLRAIPFKSK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04431 287 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g04431 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Vimu6g04431 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Vimu6g04431 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Vimu6g04431 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Vimu6g04431 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 SUPERFAMILY Aquaporin-like 45 279 IPR023271 -
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g04431 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04431 Vimu-Chr6 49617984 49619332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04431 1 287 Major Intrinsic Protein MIP AT3G61430 81.882 3.43e-175 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04431 K09872 - gmx:100809467 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04431 6 49617984 49619332 Vimu9g01220 9 20000165 20002437 PCT