Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04429 ATGAGAAGTTTGATATCTATTGATATATCATACAATCAATTACAGGGTCCACTTCCCAACATTCCAGCCTTCAATATGACTACAATTGAACTATTGAGAAAGAATAAAGGTTTGTGTGGTAATGTCTCAGGCTTGGAACCTTGCCCAACATCACGTAACAAATCTCAAAATCATAAGACTAACAGAGTCATATTTGTATTTTTACCCATTGGTTTGGGCACTTCCATGCTAGCATTATTTATCTTTGGAGTCTCATATCATCTTTGTCGAAAGTCAAAGACAAAAGAACATCCGATTGCAGAATCATCAGGCCAAAATCTTTTTGCGATATGGAGTTTTGATGGAAAGATGGTGTATGAGAACATAATCGAAGCCACAGACGAGTTTGACAATAAACATCTCATTGGAGTTGGAGAACAAGGAAGCGTTTACAAAGCTGAATTGCAAACAGGTCAAGTTGTTGCTGTTAAGAAACTCCATTCAGTACAAAATGGAGAAAGTTCAAATGATAAAGCTTTCTCAAGTGAAATTCAAGCTTTGACAGAGATTCCACACCGTAATATTGTGAAGTTATATGGGTATTGTTCTCATTCTCGATTCTCGTTTTTGGTGTATGAGTTGATGGAAAAGGGAAGCATAGATAAGATTTTAAAAGACGATGAAGAGGCGATTGCATTTAATTGGAAAAGGAGGGTTGATGCCATTAAAGGTGTAGCAAATGCTTTATGCTATATTCATAATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACTGCCAAGCTTCTAAATCCTAATTCAACCAATTGGACCTCATTCGTGGGAACATTTGGATATGCTGCTCCAGGTATTCCTTTCTTCTATAATGGTTCTCTTTGGGTATTGACACTGGAAATAGTTTTTGGAGAGCACCTTGGAGAGTTTGTAAGTTGGTTAGTGTCTTCATCTAATGAGATGGAGTCAACACTTGATATTTCTTCATTGATGGGTAAATTAGATGAACTTAGTCTCCCTTTGAATCTCTTTCAAGAAAGATCACCACCGTCTTCTTGGAGAATTCTTGGAGCTCTAAAAACCAGAGATATCAAATCTGAAACATAA 1158 0.3661 MRSLISIDISYNQLQGPLPNIPAFNMTTIELLRKNKGLCGNVSGLEPCPTSRNKSQNHKTNRVIFVFLPIGLGTSMLALFIFGVSYHLCRKSKTKEHPIAESSGQNLFAIWSFDGKMVYENIIEATDEFDNKHLIGVGEQGSVYKAELQTGQVVAVKKLHSVQNGESSNDKAFSSEIQALTEIPHRNIVKLYGYCSHSRFSFLVYELMEKGSIDKILKDDEEAIAFNWKRRVDAIKGVANALCYIHNDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPGIPFFYNGSLWVLTLEIVFGEHLGEFVSWLVSSSNEMESTLDISSLMGKLDELSLPLNLFQERSPPSSWRILGALKTRDIKSET 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04429 385 PANTHER LEUCINE RICH REPEAT KINASE 2 1 353 - -
Vimu6g04429 385 Gene3D Phosphorylase Kinase; domain 1 90 207 - -
Vimu6g04429 385 SUPERFAMILY Protein kinase-like (PK-like) 112 307 IPR011009 -
Vimu6g04429 385 ProSitePatterns Tyrosine protein kinases specific active-site signature. 253 265 IPR008266 GO:0004672|GO:0006468
Vimu6g04429 385 FunFam Leucine-rich repeat receptor protein kinase MSP1 91 207 - -
Vimu6g04429 385 Pfam Protein kinase domain 130 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04429 385 Gene3D Transferase(Phosphotransferase) domain 1 208 340 - -
Vimu6g04429 385 ProSiteProfiles Protein kinase domain profile. 129 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04429 Vimu-Chr6 49568736 49570280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04429 1 305 Receptor kinase-like Gene Family AT4G08850 47.771 9.18e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g04429 Pkinase 3.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04429 - - gmx:100811066 519.62