Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04416 ATGCTTTGCCCCTCATTGATTCTCTTCAGTTTTCGAACAAAGTCTCTTTCGATTTGGATTCCTTTGTCCAATTTAAGCTCCTATCCTGTGCATTCCTATCTCGGTGAGATCATGAATAGGGCAATTGAAGTACTGTCTCCAGCCTCCTATCTCCAAAATTCCAACTGGTTGTTCCAGGAAAACAAGGGAGGAGGATGGACTGCGGAAGAGAACAAGCTTTTTGAGAATGCTTTGGCTTACTATGATAAGGACACCCCTGATAGATGGATGAGGGTGGCAGCCATGATTCCTGGGAAAACTGTTGGTGATGTGATCCAACAGTACAGAGAGCTTGAAGAAGATGTGAGTGTCATTGAAGCAGGTTTGATTCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAGTCAAAGCTATGACGAGTTCAAGCACTTTTGTACTGTTGGTGGGAAAAGGGGTGCATCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTTGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATTTCAAGGAACTTTGTGACCACAAGGACACCTACCCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGGGGGAAGGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCTCTACAGAATCAGAAATTGTCTAGCATGGTTAAGCAGGAATATGATTGGAAATCGCCATGTGATGACATGCCTTTTGTTTTCAATTCAACAAATGCAAACATGTTCATGGCAGCACCACTGCATGGGATTTCTTCATATGAATCTAGACCACAGGAGCATAATATACTTAGACAATCCCCATGGATGCCAGTTTTCACCTTGTGA 972 0.4414 MLCPSLILFSFRTKSLSIWIPLSNLSSYPVHSYLGEIMNRAIEVLSPASYLQNSNWLFQENKGGGWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNSQSYDEFKHFCTVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLSSMVKQEYDWKSPCDDMPFVFNSTNANMFMAAPLHGISSYESRPQEHNILRQSPWMPVFTL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04416 323 Pfam Myb-like DNA-binding domain 172 217 IPR001005 -
Vimu6g04416 323 MobiDBLite consensus disorder prediction 154 173 - -
Vimu6g04416 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 221 IPR017930 -
Vimu6g04416 323 SUPERFAMILY Homeodomain-like 64 119 IPR009057 -
Vimu6g04416 323 ProSiteProfiles Myb-like domain profile. 165 217 IPR001005 -
Vimu6g04416 323 MobiDBLite consensus disorder prediction 241 262 - -
Vimu6g04416 323 ProSiteProfiles Myb-like domain profile. 58 112 IPR001005 -
Vimu6g04416 323 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 59 286 IPR043363 -
Vimu6g04416 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 220 IPR006447 GO:0003677
Vimu6g04416 323 ProSiteProfiles SANT domain profile. 173 221 IPR017884 -
Vimu6g04416 323 FunFam Transcription factor SRM1 58 125 - -
Vimu6g04416 323 CDD SANT 66 111 IPR001005 -
Vimu6g04416 323 Gene3D - 58 125 - -
Vimu6g04416 323 SMART sant 169 219 IPR001005 -
Vimu6g04416 323 SMART sant 62 114 IPR001005 -
Vimu6g04416 323 FunFam transcription factor MYB1R1 171 222 - -
Vimu6g04416 323 CDD SANT 172 217 IPR001005 -
Vimu6g04416 323 SUPERFAMILY Homeodomain-like 166 220 IPR009057 -
Vimu6g04416 323 Gene3D - 171 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04416 Vimu-Chr6 49318690 49320300 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu6g04416 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04416 - - var:108329798 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04416 6 49318690 49320300 Vimu6g04416 6 49318690 49320300 ECH
Vimu6g04416 6 49318690 49320300 Vimu6g01759 6 15994058 15995162 ECH
Vimu6g04416 6 49318690 49320300 Vimu1g00943 1 6675713 6676746 ECH
Vimu6g01759 6 15994058 15995162 Vimu6g04416 6 49318690 49320300 ECH