Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04388 ATGGGTGTTCTTTGCGTCTCCATTGGTGTTCTTTGCGTCTCCATTGGTGCTGCACCCCCAATTCCTTTCGTCGCGCCTTCAACTTCTCCTTCGTCAACTGTTCGATTCACAGGATTTCCCCAATTTGAAAACCCTAAGTTGACATTCCTGTCCTTAAAATTCCTGTTAGGCAAAAGCAATCCCGTGGCACGAAGAAAGAGAAGGAGAGAGAGAGTGAAGTTGAAGATGGAGAGCGAGTGTGGGAAGCAAAGGCATGGTGGTGAGGGGAAGAGGAAGAATAACAAAAAATTTTCGCAGAAAAACAAAGGAAAATTTGTCCAAAATCATCGACAATGTTCTAGCCCACGTGCATATCGCCTGGCTACCAGTGGCCGCTTCCTGGCCCTGGATTACTGCCACTCTCAAGGCGTTATGCACAGGGATGTCAAGCCTCATAATGTTATGATTGATCATGAGTTACGAAAACTTCGTTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAGGGACTATAACGTTTGTGTAGCTTCAAGATACTTCAAGGGTCCTAAACTTCTAATTGATCTGCAAGAATTTGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGGTGCTTGGGACTGATGAATTGAATGTGTATCTTAATAAGTATCATCTGGAACTTGATCCTCAACTTGATGCGCTTGTTGGAAGGTAA 717 0.4407 MGVLCVSIGVLCVSIGAAPPIPFVAPSTSPSSTVRFTGFPQFENPKLTFLSLKFLLGKSNPVARRKRRRERVKLKMESECGKQRHGGEGKRKNNKKFSQKNKGKFVQNHRQCSSPRAYRLATSGRFLALDYCHSQGVMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGRDYNVCVASRYFKGPKLLIDLQEFDYSLDMWSLGCMFAGMVLGTDELNVYLNKYHLELDPQLDALVGR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04388 238 Gene3D Transferase(Phosphotransferase) domain 1 126 215 - -
Vimu6g04388 238 SMART serkin_6 49 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04388 238 MobiDBLite consensus disorder prediction 88 103 - -
Vimu6g04388 238 MobiDBLite consensus disorder prediction 74 105 - -
Vimu6g04388 238 Pfam Protein kinase domain 113 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04388 238 SUPERFAMILY Protein kinase-like (PK-like) 112 214 IPR011009 -
Vimu6g04388 238 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g04388 238 PANTHER CASEIN KINASE II SUBUNIT ALPHA 128 237 IPR045216 GO:0004674|GO:0006468
Vimu6g04388 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04388 Vimu-Chr6 48627151 48629223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04388 87 211 Core Cell Cycle Gene Families AT2G38620 30.769 7.86e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Vimu6g04388 Pkinase 3.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04388 K03097 - qsu:112034018 213.001