Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04380 ATGTCGTTCGGTCATTCGCTCCCACCTCTCATCCTTCAGCATTACTGTTCGGCCCTTCAACCTTTCCACTCGGCCTTCAACATTACCGTTCGGTCCTCCTCTTTGATTCCTCCTTTCATATCTACCGTTCGGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCTGCCCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCTGATAAAGAAGATGGAAATGACTCAGAGGCACAGAGTGTTAGGCAATCTACTGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCGAATTCACAGCAACATGATCTGGAAGACAAATCTCGTAGACAGACACCTAGGGAGCAACCACCTTCAAGGCAAACCCTGCAGCCAAAGCCACCATATTACGGTCAACAACACCCTTCAGATACCATGTCTGGCTCTGTTGGAGGCGGACAACAGGGTTTTCATAAACAAAGTTTTGACATGCAACAACCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAGCAAGCAGTGGGTCCAGAGACCCCATTTTCTGAGTATCCAACGATGCACCCCTCACAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCAATGTTGAACCCTCCTTTGCCATTAGGTTACCCCCCTTACCCAAATGAACGAGCTCAACCATTTTATGGTGCTCCCTATGATATGGCTAGGCCGGACTCAGGTGCTGATATGGGTGGGGAGCAGAGTTCACTATTGGGATTCCCTCAAGGTGCCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAACACAGGGTGGTATGGTTTTGGATCCAAGGGAGGGCAAAGGCATACTGGCACCACAGCCCATGCGCCTCCCACCACCACCTCCCCCACCACCACATGTGAAACAAAACTACTATTCTGGGGAGATTGGGCATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATGGCTTTGGTAGTCAGGGCTAG 1125 0.4862 MSFGHSLPPLILQHYCSALQPFHSAFNITVRSSSLIPPFISTVRCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNDSEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQPKPPYYGQQHPSDTMSGSVGGGQQGFHKQSFDMQQPPQEPSQFSDRQQAVGPETPFSEYPTMHPSQPSNVPSLVTSNPMLNPPLPLGYPPYPNERAQPFYGAPYDMARPDSGADMGGEQSSLLGFPQGAPNGPNFPGNYPQPWNSGIGGVPFEQTQGGMVLDPREGKGILAPQPMRLPPPPPPPPHVKQNYYSGEIGHDGQGYGWQHDNRDGFGSQG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04380 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 44 364 IPR040383 GO:0016567|GO:0061630
Vimu6g04380 374 MobiDBLite consensus disorder prediction 216 236 - -
Vimu6g04380 374 ProSitePatterns Zinc finger C2H2 type domain signature. 64 87 IPR013087 -
Vimu6g04380 374 MobiDBLite consensus disorder prediction 105 134 - -
Vimu6g04380 374 MobiDBLite consensus disorder prediction 148 208 - -
Vimu6g04380 374 MobiDBLite consensus disorder prediction 330 345 - -
Vimu6g04380 374 MobiDBLite consensus disorder prediction 91 374 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04380 19 373 C2H2 Transcription Factor Family AT5G01160 37.027 9.08e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04380 K15685 - gmx:100817582 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04380 6 48397936 48399309 Vimu6g04380 6 48397936 48399309 ECH