Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04348 ATGGCCACCTTGCAGATGTCCCATGTTGATTTGGAACAAGGAAACCATCGCCGTTCGGTTGTTGGAAGTGATGCGAGCGTTGAAGGGAGCTTGTGCTTCTCTGATGCAGATGATGATTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGGTTGTGTTTCTGATCCTGAGGCTGGGGGTGTTCCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAAGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGTCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATCTGTCATTCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGATGATAACAATGGTACCACAGCAGCAGCCACAGTCTCCACAACTGCTCCTTTTACAGAACCTCGAAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCATTTGTGATATCATGGCTTTTCCACTTCAATGTGACATCATCGTAG 693 0.4574 MATLQMSHVDLEQGNHRRSVVGSDASVEGSLCFSDADDDSCYSRFYSTNGGSYDDYSFGCVSDPEAGGVPHSGRASSVSECSVELETRTGVPEIKVHLAKVEKDCRICHMGLVSDSHESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEDSTEHVSDDNNGTTAAATVSTTAPFTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVTSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04348 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Vimu6g04348 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Vimu6g04348 230 PANTHER ZINC FINGER, RING-CH-TYPE 15 228 - -
Vimu6g04348 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Vimu6g04348 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Vimu6g04348 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Vimu6g04348 230 SUPERFAMILY RING/U-box 102 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04348 Vimu-Chr6 47479981 47483196 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g04348 74 230 C3H Transcription Factor Family AT5G05830 62.658 5.86e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04348 - - gmx:100808666 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04348 6 47479981 47483196 Vimu6g04348 6 47479981 47483196 ECH
Vimu6g04348 6 47479981 47483196 Vimu1g00957 1 6753843 6754265 ECH